RNA id: XM_036944676.1


Basic Information

Item Value
RNA id XM_036944676.1
length 1541
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110490348
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55355672 ~ 55374104 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCACTTCAGAAACGGCAGGCTGTGGTCTATCGTTGGTTAGTTATAAAAATCTATGACATAGTCTTACAATTGGAATCAATTATTGTATATTAGAATCCAACCAACACgtctagcaatccaaaggttgtgtgttcaaatCCCATCATGCAGAACTATCATACTAATTTTAATAAAGAAGATTTACATTTACGATGTTActtctacccctgagtccaggttacAGCAGTAGACCTGAATGATTGAGAATGAAAGTGAAAGTGCCAGTGTGGCAGCAACACATTTGGATGAAAGGTTTGCGGCGTTATCACATACCACTTCAAAAGTTCGGAGATGCATATTATTTTCCTGTGGCTCAGTTCATCATCAGAGAGACTTTATAGACACTCCTTTATTTAAACATTGGAATAGCAGGCTCCAGTGTCATGCGGCTGTGTCTCCTTTCCCTCCTTTTTATCATCAAAGTGTGTCGACTCAATATTgtaaggcgagACGTGTGCCCACCCCTGCCTCAGTGTGAGCTCACCAAGCCCTTGAAAAAGTTGGATAGTTATCAAGAAAACTACTCTGTACACTACCAGTGTGTGGATGGCTATGTGAGGATGGCGGGGACCTCCAGTCGCATCAGGTGCAAACGAATTAATCAGGTTCTTCAGTGGGAAGGCCCAACACTGATATGCATACCCGACCCATCTATTCCAACTACAATAGTACCTTCAATAACCCACAAGAGGACTCCATCTCCCATAGTGCACCGCTCAGTGCCCACAGAGAGAATTAGCCCAAGACCAACCACTCCCAGTTCACTTTTATCTCCAATACTGCAGAACCAAGAGGTCATTACTACTGTTACAGTGACAACCACCATCATCGATGACCTTACATTAGTGCCCAGTGCGGTGACCTCTGTCTTCACGAAGACTGTTTCTCCATCAGAGAGTTACTGTGTCTCCAACAGAACCCCAGCCTCCAGTGAGGATCCAGTTGGCGatGGAAGCACTGCTACAGCCATATATGCGGGTGTAGGTGGGGTGGTAGTAACCATCTTGCTGGTTGCAGCGTTTGGAGTACTAATGTTTTGGAGAAGGAAACGGATGCAGCGGCTTGATCTGTCGCCAACACCAGACGAAATAGTGCAAATTAATGTTGTGACATGAGCCACACTCCTTAGTGCCCTGACGGACAACCAGCAGCCACTTAGAAAAGACAAAGGTACATCAGTCTGATGGTGGGGGGACAATGACCTTGGATTGGACAAGAGGTGGACCAAAAATGTATGGCCCCGACCTCGTGTGGAAAATGAAAATACCTAAAGCATCACCCAAATGGATTAATTTAAGACATATTGATTAATTTCATTTATTAATTAATATCCTTAAACTATTTTGAGGATAGATTCTAAATTAATATGGAAGCATATTGGTTATATTAAAAAACAAttaactacagtgcattcggaaagtatgcagaccccttgactttttccacatttagttacagccttattcaaaaaatcaaaacataatgacaaagcaaaaacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1493070 lncRNA downstream 42 55355672 ~ 55357072 (-) False LOC110490348
TU1493071 lncRNA downstream 42 55355746 ~ 55357072 (-) False LOC110490348
TU1493072 lncRNA downstream 1867 55353634 ~ 55355247 (-) True G1308744
TU1493058 lncRNA downstream 16849 55339726 ~ 55340265 (-) True G1308738
TU1493054 lncRNA downstream 25744 55331145 ~ 55331370 (-) True G1308734
TU1493063 lncRNA upstream 6323 55380427 ~ 55382684 (-) True G1308739
TU1493084 lncRNA upstream 23224 55397328 ~ 55397533 (-) True G1308756
TU1493085 lncRNA upstream 23665 55397769 ~ 55398048 (-) True G1308757
TU1493131 lncRNA upstream 88400 55462504 ~ 55462866 (-) True G1308800
TU1493133 lncRNA upstream 92617 55466721 ~ 55467046 (-) True G1308802
XM_021563680.2 mRNA downstream 14415 55332272 ~ 55342699 (-) True LOC110490346
XM_036944671.1 mRNA downstream 26362 55262944 ~ 55330752 (-) False LOC110490344
XM_036944667.1 mRNA downstream 106010 55236654 ~ 55251104 (-) True LOC110490341
XM_021563674.2 mRNA downstream 106125 55236654 ~ 55250989 (-) False LOC110490341
XM_036944685.1 mRNA upstream 43065 55417169 ~ 55433292 (-) False LOC110490757
XM_036944682.1 mRNA upstream 43065 55417169 ~ 55435524 (-) False LOC110490757
XM_036944684.1 mRNA upstream 43065 55417169 ~ 55438946 (-) False LOC110490757
XM_036944683.1 mRNA upstream 43065 55417169 ~ 55438953 (-) False LOC110490757
XM_036944686.1 mRNA upstream 86246 55460350 ~ 55566110 (-) False LOC110490351
TU1492936 other downstream 205003 55148775 ~ 55152111 (-) True LOC110490337
TU1492053 other downstream 588692 54766972 ~ 54768422 (-) True G1307901
TU1491599 other downstream 1206574 54150044 ~ 54150540 (-) True G1307473
TU1491414 other downstream 1434986 53899310 ~ 53922128 (-) True G1307309
TU1491355 other downstream 1599766 53756515 ~ 53757348 (-) True efcab6
TU1493091 other upstream 44219 55418323 ~ 55419245 (-) True LOC110490757
TU1493163 other upstream 182128 55556232 ~ 55556574 (-) True G1308831
TU1493247 other upstream 372181 55746285 ~ 55747753 (-) True G1308906
TU1493546 other upstream 680387 56054491 ~ 56055064 (-) True G1309187
TU1494769 other upstream 1597637 56971741 ~ 56973518 (-) True G1310261

Expression Profile