RNA id: XM_036944685.1


Basic Information

Item Value
RNA id XM_036944685.1
length 3169
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC110490757
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55417169 ~ 55438953 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCTGCGTATCGGCTTCTCCAGCTTCGAGATGGACCCAGGTCTGGCCTACCATGAAGAGGTGATCAACCCGTACTGTGCTGTCTACATGAAGGAGGCTATAGACACAGGAACTTGTCAAATGGCGGAAGGAAAATGCTGCGAAGTGGAGGTTATGCTGTAGGTAtacatcacaggaggctgctgaggggaggacggctcataataatgtccgcaACGGAGTCAAAGAGAAGGGCCAGGTGTACAAGCAGAAGAAGCCCACCATGTACCCCCCCTGGAGCAGCACGTTTGACGCCCATGTCCACCGGGGGCGTGTCATGCACGTGGTGGTGAAGGATAAAACCGCTGAGCTAAAGTCTGAGGCCGTGGTGCAGCTGGACACCCTGGCCTCACGCTGCAAAAAGGAGAACGGCAAGCTGGAGATCTGGgtgGAGCTGAAACCACAGGGTCGTCTACTCATGGAGGCCAGATACTACTTGGAGAAGAGTGACGCCGCAGGTTCAGGTGAGGGAGATGgatttggagagagagacagggatccGGGAGTCTTTGCCCTCCACGCACGACGCGGAGCCATCAAACAGGCCAAGATCCATGAGGTCAAATGTCACGAGTTCAGCGCCACTTTCTTCCCCCAGCCCACCTTCTGCTCCGTCTGTAAAGAGTTTGTCTGGGGTCTGAATAAGCAGGGTTATCAGTGCCGACAGTGCAACGCAGCCATCCACAAGAAATGCATTGACATAATCATCGCCAAGTGCACTGGGTCGGCCATCAACAGCAAAGAGACCATGATCCACAAGGAGCGCTTTAAGATCGACATGCCCCACAGGTTTAAGGTGTACAACTACAAGAGCCCCACGTTCTGTGAACACTGTGGCACGCTGCTGTGGGGGCTGGCCAAGCAGGGACTTAAGTGTGAGGAGTGCGGTATGAACGTTCATCACAAGTGCCAGAAAAAGGTGGCCAACCTGTGTGGAGTCAACCAGAAACTGATGGCTGAAGCCCTGGCCATGATCGAGACTAAACAGCAGGCCAGGGGCTCCAGAGAGAGTGAGATCTATAGTCGAGGCGGGCCGGTGGGTGTGGGCCAGGCAGGGGTGGTGCGGGAACCTTCAGGTTTAGTAGCAGGTCTCCCCCCGATCGCAGCCACCGCTGGGCAAAAAGagCAGCAGGGTATATCGTGGGACACACCAGCGATGGGAGACATGCCTGCCCCTGTGAAGGAGGAGCCTGAGACACTGTACCCTGTCCCCAGAAAGGAACACCTTCACAAGTTCACCCTGGACAACTTCGTCCTGCACAAGATGCTTGGCAAAGGCAGCTTCGGCAagGTGTTCTTGGCCGAGCTgaagagcagcagagagttctttGCGGTGAAGGCTCTGAAGAAGGACGTGGTTCTGATGGATGATGATGTGGAGTGTACCATGGTGGAGAGGAGAGTCCTCTCCCTGGCCTGGGAACATCCCTTCCTCACACACCTCCACTGCACCTTCCAGACCACGgagaACCTGTTCTTTGTGATGGAGTATCTGAACGGAGGTGACCTCATGTTCCACATCCAGAACTGTCACAAGTTTGACGTGCAGAGATCGACGTTCTATGCTGCTGAGATTATCTGTGGGCTCCAGTTCCTCCACTCCAAAGGCATTGTCTATAGGGATCTGAAGCTGGACAACGTGTTGCTAGACTCTGAAGGCCATATAAAGATAGCAGACTTTGGGATGTGTAAGGAGAACATGGAGGGAGAAACACGGACCTGCACCTTCTGTGGAACACCAGATTACATCGCCCCAGAGATTCTGCTGGGGCAGAAGTACGGCAGCTCAGTGGACTGGTGGTCCTTCGGGGTCTTGCTGTACGAGATGCTGATTGGCCAGTCTCCATTCCATGGTCGCGATGAGGAGGAACTGTTCCAGTCCATCAGGACAGATGACCCCTGTTACCCCCGCTGGCTGGCCAAGGACGCACGAGACATCCTCATCAAGCTGTTTGTAAGGGAGCCGGAGAGGAGGCTGGGTGTGAAGGGGAACATCCGTCAACACTCCTTCTTCAAAGACACAGACTGGAACGCTCTAGAGAAACGAGAGGTGGCGCCGCCCTTCAGGCCAACTGTGAAATCCCCCAGTGACGTCAGTAACTTTGACAAGGAGTTTATCAATGAGAAACCCAGGTTGTCGTGTGCAGATCGTACCCTCATGAACAGTGTGGACCAAACCATGTTTAACAACTTCTCCTTCGTCAACCCAGCTGTGGGCCACATCAAAGGCCCCTGACCTGTGACAACCTTACAACAACCTACCAGCAACATATTCACAATCCATCAACAACCCACTGTACCAGCAACATATTCACAACCCATCTGTGACCTTCGGACAACCTATTCGCAATGCATCAATTACTCATTACGACAACACATCACAGACAGGAGTCAAGGACACTTACCTAACAGATCGATAACGTATCCACAACCTGTCAATAACATCTCACCTCTTTTATAGAGCCAAGGttcacagcagtggaggctgctgagaggagaacggctcataataatggccagaacagagcaaatggattggcgtcaaacacctggaaaccatgtgtttgatgtatttgataccattccactgatcccgctccagtcattaccacgagccagtcctccccaattaaggtgccaccaacctcctgtggtgtacaGACTACTGTAGGAGTCACTACCTGATTCCCCAGAATTGTGTGGAATACTGAGAATGTTGTATTGTACTCATAACCTGTTATTCAATGGTGTCTGTTATATCCCTGCACATAAGTGTCTGTTCAATCAAATGTAACCATTTCCTGGGACATTTTCTATTTAATTCTGAAAGTGTATCAGTAGTTTTATTAAATAGAGCCACGGTTAGTATattaaaatgtgttgttttgccATTGTTATTGCTCAGATCCAGGTAGATTGTCACACTATCGGATGGTGGAGTGGTTGGTTTCAATGTACATGGATAAATGAATGGTttatgtttacatgatactgtgTTTTATAATGGCCCTTCAGAGGCTTGTGACCGCTGTGACTAAGTTATTATAGAATCTAATGACATAGATGATGCCTAGATTCAGCAGTGATTGTTTGTTTTCGTTCTGTTCattaaaataagatttttgttaAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1493085 lncRNA downstream 19121 55397769 ~ 55398048 (-) True G1308757
TU1493084 lncRNA downstream 19636 55397328 ~ 55397533 (-) True G1308756
TU1493063 lncRNA downstream 34485 55380427 ~ 55382684 (-) True G1308739
TU1493074 lncRNA downstream 58761 55358084 ~ 55358408 (-) True G1308746
TU1493073 lncRNA downstream 59381 55357339 ~ 55357788 (-) True LOC110490348
TU1493131 lncRNA upstream 29212 55462504 ~ 55462866 (-) True G1308800
TU1493133 lncRNA upstream 33429 55466721 ~ 55467046 (-) True G1308802
TU1493139 lncRNA upstream 49246 55482538 ~ 55482758 (-) True G1308808
TU1493140 lncRNA upstream 51051 55484343 ~ 55484747 (-) True G1308809
TU1493141 lncRNA upstream 51570 55484862 ~ 55485126 (-) True G1308810
XM_036944676.1 mRNA downstream 43065 55357114 ~ 55374104 (-) False LOC110490348
XM_036944677.1 mRNA downstream 43071 55357114 ~ 55374098 (-) False LOC110490348
XR_005036132.1 mRNA downstream 44685 55371010 ~ 55372484 (-) True LOC118938816
XM_021563680.2 mRNA downstream 74470 55332272 ~ 55342699 (-) True LOC110490346
XM_036944671.1 mRNA downstream 86417 55262944 ~ 55330752 (-) False LOC110490344
XM_036944686.1 mRNA upstream 27058 55460350 ~ 55566110 (-) False LOC110490351
XM_036944687.1 mRNA upstream 27058 55460350 ~ 55566110 (-) False LOC110490351
XM_036944688.1 mRNA upstream 27058 55460350 ~ 55566110 (-) False LOC110490351
XM_036944689.1 mRNA upstream 27058 55460350 ~ 55566110 (-) False LOC110490351
XM_036944690.1 mRNA upstream 27058 55460350 ~ 55566110 (-) True LOC110490351
TU1492936 other downstream 265058 55148775 ~ 55152111 (-) True LOC110490337
TU1492053 other downstream 648747 54766972 ~ 54768422 (-) True G1307901
TU1491599 other downstream 1266629 54150044 ~ 54150540 (-) True G1307473
TU1491414 other downstream 1495041 53899310 ~ 53922128 (-) True G1307309
TU1491355 other downstream 1659821 53756515 ~ 53757348 (-) True efcab6
TU1493163 other upstream 122940 55556232 ~ 55556574 (-) True G1308831
TU1493247 other upstream 312993 55746285 ~ 55747753 (-) True G1308906
TU1493546 other upstream 621199 56054491 ~ 56055064 (-) True G1309187
TU1494769 other upstream 1538449 56971741 ~ 56973518 (-) True G1310261
TU1495171 other upstream 1692522 57125814 ~ 57143499 (-) True LOC110490385

Expression Profile