RNA id: XM_036944687.1


Basic Information

Item Value
RNA id XM_036944687.1
length 3803
RNA type mRNA
GC content 0.53
exon number 21
gene id LOC110490351
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55460350 ~ 55566110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGAACGAGCTCTGTGCTGTGCAGTTGGAAGACGTCGCTCGCTGGCTTCCACCGAACGAAAGAGGCTCGCAAATTTGATTCGAAAAAAACATAATTAAGTGGAGGAATGAGGGAGATGCAGTGAAGACTGGGGAGTCTGAAGACAGACGGACAAAGGGTAAAAGGGTAAAGGTTACCAGGAAGAGAGCAGGATGCAGTCCCGCCCACAGGACAGGCCGTTGGCCCTCTCCGCGGGGAAATCCCACAGCCCGACCAATGGGAGAGAAGAACGGGTGTACTCAGACGCAGACTCCATGGAGGAAGAGGCCGACTTTAATTGGGAGGAGTACCTAGAGGAGACGGGGGCGACCGCTGCACCCCACACCGCTTTCAAACATGTGGACATCAGCCTACAGAGCAGCTTCCAGCCGGGGATGAAGCTGGAGGTGGCCAATAAGAGCAGGCCAGACACTTACTGGGTGGCCACCATCGTCACCACCTGCagccagctgctgctgctgcgctTCAGTGGCTATGGAGATGACCGCAAGGCCGACTTCTGGTGTGATGTCATGACAGCCGAACTCCACCCAGTAGGCTGGTGCACCCAGAACAACAAGACCCTCCAACCCCCTGAAGCCATCAAGGAGAAGTACAGTGACTGGACAGATTTTCTCATCCAGGACTTGACTGGCTCACGGACCGCACCAGCAAACCTACTGGAAGGGGCTCTGAGGGGGAAGAACACAGTGGATCTGATTGTGGAGGGTTCGGTGATGGAGGTACGGGACCTCACTGACCCCTACCTCTACTGGGCTGCCCGCGTCGCCCAGAACATTGGTGGGAGGCTCCGCCTACGCCATGTAGGTCTCCAAGACGACGCCCACGACACCTGGCTGTTCTACCTCGACGTGAGGCTCCGCCCACTGGGCTGGGCTCAGGAGAACCGCCTGTCACTGGAGCCCCCAGCAGAGTTGCGTGGCCTGAAGAGCGCCCTCGAGTGGCAGGAGGCCCTGGAGGCGGTGCGGAGCGAGGCCCAGCAGAACCCACTGCCCCTGGAGGTGTTTAAGGACCATGCAGACCTGACCAAACACTCCTTCAGGACGGGGATGAAGCTGGAGATGGTGTCGCCGTCGGAACCGTTCCACATCTGCCCTGTATCTGTCACACAGgtctACAATGAGCACTACTTCCAGGTCACAGTGGATGACCTCACTCCAGAGGCCACACCCCTGTCCCTGGTGTGCCATTCTGAGTCACCGGGCATCCTCCCCGTCCAGTGGTGTCTGAAGAACGGGATTGGTCTAGAGCGGCCCAGGGGCTACCAGAGCCAGGACTTTGATTGGGCGGACTACCTGAAACAGAGTTGGACTGAGGCCGCCCCCGACGCATGCTTCCCTAACgcgtgGCAGAGCCGAGGCTTCGCCAAAGACATGTGGCTGGAGGCCGTTAACCCTGTCAGGCCCACCGAGGTGTGTGTGGCTCAGATCACACAGGTCAGGGGTCGCCTGCTGTGGCTCAGACTGGAAGGCCTGCCTAAGTCTGTCCCTGAATGTATTGTGGATGTGGAGTCCATGGACATCTTTCCTGTAGGATGGTGTGAGACCAATGCTTACCTCTTGACTCCACCACTGAAGCCTGTCTGCCAGCAGCAGAAGAAGATAGCCGTCGTCCAGCCAGAGAAGCAGTTGGCTCCGCCGCAACCCGTGGAGACAATCCCTCTCGACCTCTGCGAGCCCGTTGCCATGGACACAGgcTCAGCCAATGGGAGATACTGTTGTTCCAGGATCTACGTGAACCACCGCTGTTTCTCTGGCCCTTACCTGAACAAGGGGCGCATCGCTGAGCTGCCACAGGCTGTAGGGCCGGGGAAATGCACTCTGGTCCTCAAAGAGGTGCTCAGCATGCTAATCAATGCGGCCTACAAGCCTGGGCGTGTCCTGAGGGAACTACAGGATGTGGAAGAGCAGCACTGGGACTGCCACGAGGAGACCCTCAAAGCCAAATACAAAGGGAAGACGTATCGATCGTCCATCCGGATCGTGCGTCTGGCAGAGCAGATCCCAGACTTCTGTCGTAAAGTGTGTGTGAAGCTGCAGTGCTGTCCCAACCTCTTCAGCCCCGTCCAAGTCACAGGCCAGTGTCCTGagagctgctccatgcagacCAAGACCAAATATAGTTGGTGTGTGCGTGCGCGAACAAATACAGTAATTTTCTAcaagtCGTATTATTACGGTAAGAAGAAGAAGCTGTCTAAGCCgtttggaggagaggagagtctggAGGCCAAACCCACACGACGCAGGAAGAAGAGGAAGGCCATCTTTGTCCAGAAGAAACGGCGCTCGTCTGCAGTGGACTATACTCCTGCAGGGTCACCACAGGACAGTGATGAAGACGAGGATGAAGATGATCTTATGTTGCAGTCGGGCAGTGAAGAAGGCACCAGCTCTGAGCCACGCGAGGACCACATAGACACATCCTCTGTGGAGGTGGCTAACAGCCGGCCGCGGTGTGCCGTGATGCTACGCAGGGCCACCCATACCGGCATAGCTTCGGGCAGCCGCGAGGGTCCTGAAAGCAGGAGCCGGAGCACTCGGTCCCTGTCATATAACCAGGGGAACAAGTACCACCCACCCAAGAGACAGGAGATGCAGGTGGAGTGTAGTGAGGCGGAGTGCCGGCTGGTGTTGGAGAGGAACCCTCTGGAGTGGTCCGTAGAAGATGTGGTCACCTTCATCACCTCCACCGACTGTGCTGCTCTCGCCAACATCTTCCAggagcagGACATAGATGGCCAGGCGTTGTTGTTGCTGACCCTGCCCACAGTCCAGGAGTGTATGGAGCTGAAGCTGGGTCCAGCCATCAAGCTGTGTCACCAGATAGAGAGGGTCAAGGTGGCCTTCTATGCCCAGTACGCCAACTGATCCTGGGCATCTCACCTGGCACCTTTTACCCTGTAGAGCACAGGCTGTCTGGAGACACCCCGCCCAGTACACCTTcatctgaggaagaggaggagagatgatttCGCTTAATGCCAAGTCTGGGATTACCTGGTATGGAAGGCTGGGAGGAAAGTGGGAAAACTGGTAATGCTGTCGCTTAGGAATTCCTCAATTCTGGACATGGATTACCCAGCCACTTTTCCGGGGATTACTGATGTCACATAGAGAAGGAAGTGACTTCAGATGAAGTAGAAGAGGAGCTACCCACGTACGGAGCTCAGGACGTCATCTGCGACAACAGGCAGAGATGGTTTGGAAGGTTCAGATTTCCATAGGAAGGATCAGTCAACTGTGAATGGTTGAGTACGATACATATGAGTCAATCCAATCCGTATGGAATACAGATCTGTGAAGAAACTGATCGAAATCGAGGATTATTTTCTTGggaaatcgtttttttttttttttttacatgctgTTTGAGACTAATGGCCCTGGCAGCGTTTAATTTATGAACAAATGTTATTAATTATTTGTTCAAtgttttccctctttgttatatTTAAGTAAATTAGCTTAATATATTTCATTAACGAAAATCGGTTAGTAACCTACAATATATTTGCAATATTTATTGTATTCCTTATTGAATAGATGTCATATCTAATTTGGATGtaagaaaaatatatttagaGAGAGTTGATAGGCTATTGAAATGTCCAAGTCTTTGGGTTCAAATATGTATTTAAGGAAGTTCATGAGTTATTCCAGTCAATAGTAATTTAGTCCTGTTATTAAATCATCTGTTTTTTCTTGTGTGCATAGGGAAATATTAGGTCCGTTGCATTTTCTCATTAAATTTGTAAAAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1493085 lncRNA downstream 62302 55397769 ~ 55398048 (-) True G1308757
TU1493084 lncRNA downstream 62817 55397328 ~ 55397533 (-) True G1308756
TU1493063 lncRNA downstream 77666 55380427 ~ 55382684 (-) True G1308739
TU1493074 lncRNA downstream 101942 55358084 ~ 55358408 (-) True G1308746
TU1493073 lncRNA downstream 102562 55357339 ~ 55357788 (-) True LOC110490348
TU1493177 lncRNA upstream 65018 55631128 ~ 55631900 (-) True G1308845
TU1493182 lncRNA upstream 72117 55638227 ~ 55638435 (-) True G1308850
TU1493191 lncRNA upstream 92304 55658414 ~ 55658626 (-) True G1308859
TU1493195 lncRNA upstream 98239 55664349 ~ 55664849 (-) True G1308863
TU1493208 lncRNA upstream 118871 55684981 ~ 55685191 (-) True G1308872
XM_036944683.1 mRNA downstream 21397 55417169 ~ 55438953 (-) False LOC110490757
XM_036944684.1 mRNA downstream 21404 55417169 ~ 55438946 (-) False LOC110490757
XM_036944682.1 mRNA downstream 24826 55417169 ~ 55435524 (-) False LOC110490757
XM_036944685.1 mRNA downstream 27058 55417169 ~ 55433292 (-) False LOC110490757
XR_005036132.1 mRNA downstream 87866 55371010 ~ 55372484 (-) True LOC118938816
XM_021563697.2 mRNA upstream 18536 55584646 ~ 55598669 (-) False LOC110490354
XM_021563698.2 mRNA upstream 18536 55584646 ~ 55598669 (-) False LOC110490354
XM_021563699.2 mRNA upstream 18536 55584646 ~ 55604469 (-) True LOC110490354
XM_021563700.2 mRNA upstream 51571 55617681 ~ 55623649 (-) True LOC110490355
XM_021563719.2 mRNA upstream 1088640 56654750 ~ 56658042 (-) False LOC110490369
TU1493091 other downstream 41105 55418323 ~ 55419245 (-) True LOC110490757
TU1492936 other downstream 308239 55148775 ~ 55152111 (-) True LOC110490337
TU1492053 other downstream 691928 54766972 ~ 54768422 (-) True G1307901
TU1491599 other downstream 1309810 54150044 ~ 54150540 (-) True G1307473
TU1491414 other downstream 1538222 53899310 ~ 53922128 (-) True G1307309
TU1493247 other upstream 180175 55746285 ~ 55747753 (-) True G1308906
TU1493546 other upstream 488381 56054491 ~ 56055064 (-) True G1309187
TU1494769 other upstream 1405631 56971741 ~ 56973518 (-) True G1310261
TU1495171 other upstream 1559704 57125814 ~ 57143499 (-) True LOC110490385
TU1495287 other upstream 1676570 57242680 ~ 57247843 (-) False LOC110490387

Expression Profile