RNA id: XM_021563700.2


Basic Information

Item Value
RNA id XM_021563700.2
length 1625
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110490355
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55617681 ~ 55623649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACGAAATACCCACGGAAGCGGCAGATTTTTAGGAGGAAGGAGAAGTGCATAACAACGTTTGAACGTGTTCGAGGCTTATTTCGAATTTAAATAATTTATATGTAGACGATTATTATTTGACATGGGGAAAGAGGGTTTTCTAAGCCCAAAGGCGATCGGGAATAGGATCAAAGCAAAAGGTCTTCAAAAATTGCGATGGTATTGTCAAATGTGCCAGAAACAATGTCGAGACGAGAATGGCTTCAAATGCCACTGCATGTCCGAGTCCCACCAGAGACAGCTGCTGCTGGCCTCGGAGGACCCCAACAAGATCATGGACAACTTCTCACAGGAGTTCAAGAATGACTTTATTGAGCTGATCAGAAGACGCTTTGgAACCAAGCGAGTGCAAAACAACATTGTCTATAACGAGTACATCAATGACCGAGAGCATGTCCACATGAACTCCACCCAGTGGGAGACTCTCACTGAATTCACCAAGTGGCTGGGGAAAGAGGGTTTCTGTAAGGTGGACGAGACACCCAAAGGCTGGTACATCCAGTACATCGACCGCGACCCAGAGACCATCCGGAGGCAGGAGGAgctggagaagaagaagaagcaggacCTTGATGACCAGGAGCGCAGTGCCAAGTTCATAGAGGAGCAGGTCCGCCGAGGCCAAGGAGGCAGGGAGCCAGAGGAAGCACCAGTTTTCACTGAGTTGAAACGAGAAAGTGAAGAAGAgaaaaTTACCTTCAATCTGGCCAAGGGCTCCTGTTCCTCTGCGGATGGCCCATCTAAAGTCAGTGTGGCCCTGGGTCCCAGTGCCCTGAAGGCAGCAGGGTCAGGGAAAAGGAAAGATGCTCCCTCCACCTCAGAAgccaaagagaagaagaagaagtcagCCCTGGATGAGATCATGGAGATGGAGGAGCAGAAGAAGAGGTCTGTGAGAGCGGACCACTGGCTGCACCCCGGCATCGTAATCAAAGTTGTTACCAAGAGACTGGGGGAGAAATACCACAAGAAGAAAGGAGTCGTCAAGGAGGTGCAGGATAAATACACGGCCGTAGTGAAGATGATTGACTCAGGGGACAAACTGAAACTAGACCAGAGTCACCTGGAGACGGTCATCCCTGCACCAGGTAAACGGGTCCTGGTTCTGAACGGTgtgtacagagacacagaggcccTACTGGACTCCATAGACGAGAGAAAGTTCAGTGCCACCCTCACACTTGACTCGGGTCGGATGAAAGGGAGGAGGGTGGACGGGATCGCCTACGAGGATTTCTCCAAAATGGCCTGATCTATCATGACTTCCGTTACATGACAGCGTAACCCAAGAGCCCCTACCCTTCCACCGAGAGGCCCATCAGCTGAGAGACTCTACTGTGTCAGAGTTACCCTCTGTAAATATCCCAGAATGCATTTTCTATGGAGGTATCACTTCCTGAGTTAGCCGAGTAATGATTGGGGGGCGGggttgtatttttattttgtattgttaTTAAATGGTTCTCtacaaatacatttgaatgtTGTAATATTACTTACTGAATGAAGTACAACACAATTGACCTATGTATTGATTGAAAAACATTTGTATTTTGCCATGTAAAATGAGGTCTGAGAAATACAA

Function

GO: NA

KEGG:

id description
K13102 KIN; DNA/RNA-binding protein KIN17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1493161 lncRNA downstream 77315 55537354 ~ 55540366 (-) True G1308829
TU1493149 lncRNA downstream 85879 55510209 ~ 55531802 (-) True G1308817
TU1493145 lncRNA downstream 124014 55493451 ~ 55493667 (-) True G1308814
TU1493141 lncRNA downstream 132555 55484862 ~ 55485126 (-) True G1308810
TU1493140 lncRNA downstream 132934 55484343 ~ 55484747 (-) True G1308809
TU1493177 lncRNA upstream 7479 55631128 ~ 55631900 (-) True G1308845
TU1493182 lncRNA upstream 14578 55638227 ~ 55638435 (-) True G1308850
TU1493191 lncRNA upstream 34765 55658414 ~ 55658626 (-) True G1308859
TU1493195 lncRNA upstream 40700 55664349 ~ 55664849 (-) True G1308863
TU1493208 lncRNA upstream 61332 55684981 ~ 55685191 (-) True G1308872
XM_021563699.2 mRNA downstream 13212 55584646 ~ 55604469 (-) True LOC110490354
XM_021563697.2 mRNA downstream 19012 55584646 ~ 55598669 (-) False LOC110490354
XM_021563698.2 mRNA downstream 19012 55584646 ~ 55598669 (-) False LOC110490354
XM_036944686.1 mRNA downstream 51571 55460350 ~ 55566110 (-) False LOC110490351
XM_021563719.2 mRNA upstream 1031101 56654750 ~ 56658042 (-) False LOC110490369
XM_021563721.2 mRNA upstream 1031101 56654750 ~ 56658049 (-) True LOC110490369
XM_021563717.2 mRNA upstream 1087418 56711067 ~ 56776535 (-) False LOC110490368
XM_021563718.2 mRNA upstream 1087418 56711067 ~ 56776535 (-) True LOC110490368
XM_021563713.2 mRNA upstream 1102662 56726311 ~ 56730594 (-) True LOC110490364
TU1493163 other downstream 61107 55556232 ~ 55556574 (-) True G1308831
TU1493091 other downstream 198436 55418323 ~ 55419245 (-) True LOC110490757
TU1492936 other downstream 465570 55148775 ~ 55152111 (-) True LOC110490337
TU1492053 other downstream 849259 54766972 ~ 54768422 (-) True G1307901
TU1491599 other downstream 1467141 54150044 ~ 54150540 (-) True G1307473
TU1493247 other upstream 122636 55746285 ~ 55747753 (-) True G1308906
TU1493546 other upstream 430842 56054491 ~ 56055064 (-) True G1309187
TU1494769 other upstream 1348092 56971741 ~ 56973518 (-) True G1310261
TU1495171 other upstream 1502165 57125814 ~ 57143499 (-) True LOC110490385
TU1495287 other upstream 1619031 57242680 ~ 57247843 (-) False LOC110490387

Expression Profile