RNA id: TCONS_00043847


Basic Information

Item Value
RNA id TCONS_00043847
length 1730
RNA type mRNA
GC content 0.48
exon number 9
gene id XLOC_022214
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 14808221 ~ 14990921 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTGTGTAAAttacagaagaaacaaactcatggctcttctttgaatttttttagtaGCTTTATAGGAATGCTTCTTTGTTGAATGCAGTGCTGCTTACTGATCTACACTAATACAACAGAGCGTCAGCAGTGATTGGCCTGGCTTGTGATATCACACTTGGAGGAATTCTGAACCACACATTTTTACAGACTGCTTGTGATTTATGGCGATCATAAACAgagACATCTGTGCGTCAGCAAAGGAGAGACAGTTAGACCTGTTCGTCACAGGAAACTGCAAGTGTGCAGTAAATAAAGCCGCCTGCCTCCAGCGTGCACGCTAAAACACAGAGAGCACAGCAGCATCAACATCATCCTTCACCTCAGTCTAAGAACATCAGCTAACCATAACCCTAACCTTGGGGGTGAAATTGCTCTCAGTATCTCAGTTTTCAGATGTGCATGTGAGGAGCTCTGTTTGCTCGTGCAGAAAGGATTATCATCAATTCCACTCTGAGGACCATGATATTGTGGTCCCCATCATCTCTGTGCAGGTAAACACTGTAGATCAGTATGGGCAGTCGGCCCAGTAAAGACCGGCGTGGATCCAATGCCCATGCTGTCCTGTTGGACACAGAGGACAGCAACGGCCCGCTGACCATGGaaaGTATCAGATATGTGCTGGTGTCTCTGTATGACTATCCATCCAGAGGTCCGGGCGACTGCGCCATTAGAGTCGGAGAACGCCTCAACATTCTGTCAGAtgaGGGAGAGTGGTTTAAAGTCAGCTCATCAGCCACAGGAAACGAGAGCTACATCCCCAGCAACTACACCGCCAAACTCTACAACAGgTGGCAGTTTGTGGGTCTCAGCAAACGGAAATCGGAGGAACTGCTGATGCTCCCTCATAATCAGCCCGGCTCTTTCCTCATCAGAGAGAGCGAGACCTTTCCAGGTAACTACACTCTGTCAGTGCGCAAAAGCGGCTCACAGGAGCGTGCATCTGTCAAACACTACCGTATCAGCTGTATCGACAACGGCTGGTTCTACATCTCTCCTGGACTCACCTTCAGGACCCTCTCAGACATGATCGCGCACTATTCAGTATCGGACGGGTTGTGCTGTACTCTCGGAGAGCCGTGCTTCATCATCGGATCCAACAATGTCCCTGTGGTCAATGGCGCTCCTCCGGTTGCGGTGAAAAGGCCAACTATCAACTGGAAAGATGTTGACAGCTCCATGATCTTCAGTCAGACTAAAGAAGGAGCTGAGGATTCTCTGGTGAGCGAGGGCCTGAAGGAAGCCATCAATTCATACCTCTACATGACGGAGAAATGCGAGGACTGCTGTCAGCTCTGGGAGACGTGACAGGAGAAAGAGCGAGCGTATAAAGGACTTTCGCTCGTCTGTTTCTTAGAAGATGAGTGCAGAAGCGGTTTGGGCGTCGGATGAAGTTTTCCCTGACTCATTACTGTTCTTCCAGAGTGGGTGCTGGAGATGTCAGATGTGAGACTCGTCCTGAAAGAGCcacagaggagtgtgtgtgtgggtggaggAACAGATGGAGGTGGCGCATCCACTTACACACACTTGTGACGCATTTACATGAGGCGGCATGTCACTGGAAGACCAGAGGAGCTGTACTTACAGTATCAAGGAGATATTGGTCGATGTATCACTTCAATTGGAAAAAAGAATGTATTTATAACTTGGaatatttgtttgtaaataaatgtacagttttcAAATA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-080204-98 Predicted to enable receptor tyrosine kinase binding activity and signaling adaptor activity. Predicted to be involved in cell migration and signal transduction. Predicted to act upstream of or within regulation of signal transduction. Orthologous to human SLA2 (Src like adaptor 2).

Ensembl:

ensembl_id ENSDART00000134659

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044973 lncRNA downstream 69835 14735335 ~ 14738386 (-) True XLOC_022212
TCONS_00044972 lncRNA downstream 224682 14574498 ~ 14583539 (-) True XLOC_022211
TCONS_00043844 lncRNA downstream 393008 14407888 ~ 14415213 (-) True XLOC_022210
TCONS_00044971 lncRNA downstream 984029 13818507 ~ 13824192 (-) True XLOC_022203
TCONS_00044970 lncRNA downstream 998624 13806359 ~ 13809597 (-) True XLOC_022202
TCONS_00043852 lncRNA upstream 2505 14833132 ~ 14846838 (-) False XLOC_022214
TCONS_00043853 lncRNA upstream 2505 14833132 ~ 14847345 (-) False XLOC_022214
TCONS_00044974 lncRNA upstream 2505 14833132 ~ 14858602 (-) False XLOC_022214
TCONS_00044975 lncRNA upstream 2505 14833132 ~ 14867136 (-) False XLOC_022214
TCONS_00043854 lncRNA upstream 2846 14833473 ~ 14847345 (-) False XLOC_022214
TCONS_00043845 mRNA downstream 38698 14743087 ~ 14769523 (-) False XLOC_022213
TCONS_00043846 mRNA downstream 41319 14743455 ~ 14766902 (-) True XLOC_022213
TCONS_00043843 mRNA downstream 404282 14265122 ~ 14403939 (-) True XLOC_022209
TCONS_00043842 mRNA downstream 591715 14193547 ~ 14216506 (-) True XLOC_022208
TCONS_00043839 mRNA downstream 749136 13940958 ~ 14059085 (-) False XLOC_022206
TCONS_00043851 mRNA upstream 1918 14832545 ~ 14937101 (-) False XLOC_022214
TCONS_00043856 mRNA upstream 31060 14861687 ~ 14990865 (-) False XLOC_022214
TCONS_00043859 mRNA upstream 162173 14992800 ~ 15036789 (-) False XLOC_022215
TCONS_00043861 mRNA upstream 215917 15046544 ~ 15090782 (-) False XLOC_022216
TCONS_00043862 mRNA upstream 217425 15048052 ~ 15088316 (-) True XLOC_022216
TCONS_00043841 other downstream 818739 13989364 ~ 13989482 (-) True XLOC_022207
TCONS_00043838 other downstream 933621 13861420 ~ 13874600 (-) True XLOC_022205
TCONS_00043837 other downstream 950704 13854969 ~ 13857517 (-) False XLOC_022205
TCONS_00043832 other downstream 1093721 13714386 ~ 13714500 (-) True XLOC_022201
TCONS_00043831 other downstream 1172314 13635793 ~ 13635907 (-) True XLOC_022200
TCONS_00043855 other upstream 3036 14833663 ~ 14858602 (-) False XLOC_022214
TCONS_00043860 other upstream 170732 15001359 ~ 15014574 (-) True XLOC_022215
TCONS_00043863 other upstream 277221 15107848 ~ 15107962 (-) True XLOC_022217
TCONS_00043872 other upstream 1115527 15946154 ~ 15951976 (-) True XLOC_022224
TCONS_00043875 other upstream 1730606 16561233 ~ 16562161 (-) True XLOC_022227

Expression Profile

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