RNA id: XM_021563718.2


Basic Information

Item Value
RNA id XM_021563718.2
length 7362
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110490368
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 56711067 ~ 56776535 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGCTCATTGAGTAGCGGACAATTGCAGTGAGTATCACCATCAGTACCACAACGGCACGCCAAGCCCCGGTGCTCAGACCGACCGACCTCCACACAGAAAATCCGCCACAGTCATTCCCTGCCAGCCATGAAACAGACTCTGCTCGAGCTGATGAGGATGAGCAGAATATGCCGGATGGTACTCGCCACTTGTTTGGGATCTTTTATTCTGGTCATCTTTTATTTCCAAATCATGCGGAGGAACCAGTTTGCGGCGGACGTGTGCTGTAGGAAAGACTCCCGCAACGCACTGCAGGAACTCTACAACCCCACACAGtctgagTTTTCCAGTGCCGCCATCCTCCACCAGGCCAGGAGAGACCATGTAGCTGAGTCATGTCGGGCCCAGAGTGCATCCAGCCGCAAGCGCCGGGTCCTGACCCCCGGTGACCTCAAACACCTGGTGGTGGATGAGGAGCATGAGCTCATCTACTGCTATGTCCCCAAGGTGGCCTGCAGCAACTGGAAACGTGTCATGATGGTCCTCACGGGACGCGGCAAGTACAGTGACCCCATGGAGATCCCTTCCAACGAGGCCCACGTCCCGTCCAACCTGAAATATCTGAATCAGTACAGCATCGCTGAAATCAACCACCGCCTCAAGAGCTACCTCAAGTTCCTGTTTGTCCGGGAGCCCTTCGAGAGGCTCGTCTCCGCTTACCGCAACAAGTTCACCCTCAAGTACAACTCCTCCTTCCACCGCCGCTTCGGCACCAAGATCGTCCGCCGCTACCGGAAGGACGCCACGCAGGAGGCGCTGCTCAACGGCGCCGACGTCAAGTTCCGGGAGTTCGCCGAGTATCTTGTCGACCCGGCTACCCAACGCGACGGCCCGCTCAACGAGCACTGGCAGACGGTGTACCAGCTGTGCCACCCCTGTCACATCCACTATGACCTGGTGGGCAAGTATGAAACCCTGGAGGAAGACGCCAACTATGTTCTGCGGCTGGCGGGGGTGGGCGAGTCGCTGCGCTTCCCGACCTACGCCAAGTCCACCCGCACCACAGACAGCATGACGGCCCAGTTCTTCAGCAACATCAGCTCCCAGCAGCACAGCCAGCTCTTCCAGCTGTATAAATTGGACTTCCTCATGTTCAACTATTCCATGCCAAGCTATCTGCGACTGGACTAACGACTAGAGGACCAGGACTTGACTAGCCAGCTGGGACTCTGGGCACGATCCACTTTTATTAAGAGAAGAACATAAGAACTGAGTGAAAGTGGAGAACAGATATTTTTGCAGAAGTTTTATTCAAAAACTGTCGTCGCTATTTCTGGGGGGTGAACAGGAAGGACTGAGGGGAATGGGAGGGACAGAGATTGAGGAAAATTGCTGGATCCGATTTGACGTGAAAGATTCTTGGTTATCCAATCAGCATTGTCCTGAAGGTGATAAAGGAGGAAGTGGAGATCCTATAGCATCAGAATGCAGGGTTCGGGTGGAGCTGATGTCAGAGGTTTTCTAAGAGGGGACATAGAGGAGAGAAGCAGGACTCCTGGAGAGTGATCGATATGTGTTCTGTATGTACATGAGGTGGGACTCTTGACCAATTAGTCTGCTTTGGAATCTGCACAGCAAACGGTGGCCTCGCATGCACGTGCCCTGGCCCCAAAGCATCATGGGAGCTGAGTTTATTTTATAACAAACAATAGCGAAACTCCGTCAAATTGTAAAACACATCCATGTCCTTCAGTGTGCTGTATCCTGGGTGTGTTTGATACGCCCACCAATTAAGTAAACTGGCAATTTGATAAGTAAACTGGCTCTTGGCTCCACCTCAAGCCCTCCTCATTATAGCTGGCTATTGACTTTGCTTTAAAGACCTCTAGAACCATTAGGCGTAAACAGTGGAGCTACAATTTACAGCCAACTGCTCTAAAGTTGTAGCTATGCTGTCAAGATCGCCATCGTCATAGGTGAAACAACTCCTGAATCCTCGTTTGCCAGTTGAGGCCTCAGACTCCCATAGCAGGATCTGAAAAGGCGGCCATTTTAGAAAGACGCTGAGCACCCTTGAGGCTTTGAGCCACAGGAAGTGGTCAGAAGGAATGATTGACAGGTGTTAGGTGCCTCCCACTGACCCAGAGAGGAACCGTAGAAGAGATGTGGCTGTGAAAGGGTTTAAGGGACAGGATCTCATAAATCCGCCCACACCACACCCCAAAACCAGGCAGGGCCATAACCTTGCCTACTGGCCATGCCCATTACCCCCCCACACCCCCTTCAACGAGCAATGTCTCGGTTTTAATGTCTGATGAAAACTTTGCTGCGAGCAgcaataaaaaatattatttaaattACTTTCATTGTCGGGGGGTGGGTGgggtggatgagagagaggaagatttaaaaaaaaaaaatgttgggctGATTAACATTTTTAATTGATTTAATTAAAAAGATTTTCATcaagatttttaaaaaatacgTTTTTCATGTTTTTTGTCCTGAGTTGCTTCCGGTACACTGTTAATGATAACATTTTAATGGTCTTCCTTTTTCCCGAAGGGCGTACAATACAATAAAGTTAAGTCCATGACTTTggtttctctgtgtgtgagagctggGACATCCCATGGGATTTAGAgttattccctctctcccccttagtCAACTGAGTCTGGTGCCAAAGGGTTGGAACACTGCCAATGGCAGAAAGGGACAGTCAACTCAACTCTTATCAGTACTTTTCACTACATCTAATAATTTACAAAACATTTACAATCCTGTGATTGAAATGAAACTATAGCATGAGAAACATATTCTACATACATATCTACATCTACAGTGCAGACTACTGCTCAGAATCAGAAACAACAGCAGTGGTTGCCTTGATAATGATTCTGAGTCTGGCGGTGAAAGTCAGGTCTGTGTCCGCCCTCCCCAGGTGAAAGTGCGCTGTAATCATTACTCTGTGTAGTCTATGGGATCACAGAGAGGCGTATACACAGTGCAGGAGTGGGCgacggatggagagagaagacaaCTTAATTAGCCaagctgggagggagggagtcctcTTTACTCTTTATACCCCTTTGTCATTCTTCCTCCATTCAGACTTCAAAGAGAGAGGGACGTTTATTGGGAAAATTGTGTATTTTTATGTTGCTAGGTCTGAGCAGAAGTAACAGCAGCACAGAAGAAATGATCACTACTATATTCATCTGTCCCTCTGACCGTTAGTTTAGACAGGCGTGGTGACTAATGACAAGCTCACCTAATTTTGCCATAGCTTCTAAAATATTGGTGGcagttgtgtgtgtttgcacgtaTGTGTCATTATAATTAGCAACCGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATAGCGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAGATGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATAGCGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATAGCACTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAAAGGAAGGCTGCTGGTTTGGAGGAATAAGGCCCTTCACATAGCGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAAAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATAGCGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATAGCGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAGATGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATAGCACTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAAAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATAGCGCTCTGATAAAGAGGAAGGCTACTGGTTTGGAGGAACAAGGCCCTTTACATCTGGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGTTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATAGCGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATAGCGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATAGCGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATAGCGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATCTGGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATAGCGCTCTGATAAAGAGGAAGGCTGCTGGTTTGGAGGAACAAGGCCCTTCACATAGCGCTCTGATAAAGAGGAAGGCTATTGGTTTGGCCTACATCTCCGACCCCATCCACTTACAGAAACAATGGGAGCATTCTgagctctccctcctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgatggtgATGCCACGCAGCCTCTTACTCAGCAGCTGTACTCTAGTGAGGGTTGGTAAGTGAGGTacggaaggagagggggatggacaTTTAAAAACACCACACACTCAGCTTATCTCTAACTGCCTATTTAACCTCCAAAATGAGACACTTTACTCAAAGGCTTCACAACTCTGCAAACAGTTAtggagtcctctcctctttactccaacctctctctcaaaaTGGCCCCATATAAAAACAGAAGTGGGTTTTTGGACAGTGGCAGTGATCTCTACCCTCACAACAGGAAAAGGGCAGGCTTCTTATACAAACAGAGCTGTTAAAATCCCACAGAAGCCCAGCCTAACGATCCCTGTGGAAATACTGACCTGAttccccaaaatatatatattctccaTTCTTATTCCATATCCTAGCTCACTCTACCTACAAATCCACCTGAATCCAATTCTGACATGTTCATTTAGTGTTCTTGTGCTGTATAAGTATTTATTGACGAGTGTACGGGTATATTTATGTTGTTGGAGAACGACGTCTATTGTTGGACTGAATTACATATTTACTGTGTTGCTAAATGCAGAAGCACAGGAAGTGCACGCTCCTCTGCACATACGTAAACATATCCACTCTAGGGCCGGGGGTTTCTAGCCAGAGATAAGCAATTTTTTTTGTGAATTATGGTTTTATCTTTCTGTCTATGAGATATTCTTATTCAATCAGTCTCTGTGCAACAGTGAAAACCTCCCCATAATGACCATGAAACTTCCTTTGTGTTACACATGATGTTTCCTGCTGTTACGAATTAGCCCTTTGGTACCAACTCACAGACCATGAGGCGTTTCAGAAATATTGCCAACTGTTGAAATCACTGGAAGGTGGTTAGTGCAGATCTCCCACTCAAACTGCATTGAAACTAAAGCCAAGAATGGTAATAGagctttttccttttctgttgtaTTCCTCTGTCAGCAACACTCCACAGCAGCTTTTCATTGACCTCATAGAAGTATAACATATAGATAGAACACAGTTTCTTAGATATGACCTGCAGCATACGTGTGTTGAATGGAACCATGATCATTTTGTTTATTTCAATGATTATGTCCAATCCATTCTATGGTTGCCTCCTACATAGCCTATAGTACATGACCACAGGGCACTCCAGTCACCACAGACAGTACCTTTTTATGCTGAAATGATCTGTGCCTTTTCATTCCTCTCATTGGAGCACTTTACTGTCATCTGATTGGTcagtccacaaacacacactctccctcttcaACTGTCAGGTGAATGTTGTAAAACAGCATCCCACACACTAACACAGATCACCTGTAGAGAGACTCATGTGACCACATCAAGAGGATTTGCAAATAGAGGGTTTTTGAAATGCTTGCTCTGCTCAgatcttccctcctctcctaagCCTTCAGATACAGGATGGTTTTCTGTGGCTCTGTGTTGCTCAGAGGTTGTACGTACACCCTTCAAATCCACACTTCAACCCTCAGATCTCTGTGTGCTAGTTTCAGTGTTCTCATCCGTTGCCAGATGGTGAGTGTGTGTTCACTTAAATCAATGTTGTTGAGAGTCTAAGCTGGTTACTCTGCTGTTAGATACCATGTCATCGGCCGGCTTGTGTCGGAGAGGTCACTATGTGCTGTACCAATGAGTGTgtatctgagctgtgtgtgtgtgtgtatatatatatatatatatataaggtcgCTCTGTACTGTACCTCCTCTGCCTTAGAGTAACTCCAGGAACTCAAACAGGCTacgttgtatttatttattcattcacCAACGACTACCCATAACATTCCTCCTCGTGGTCTCCATGGCAACACACCTGGACTTTTCTCACGGGGCAGACTGTCGGTTCATCATCAAGGCCCTCTCACCCGAAACATGAATAATTGAATATATTGACTGCAGGTAGTGGGAGAGGAGTTGTGATTCCCCAGCAGTGTTCATTCTGGTTCATTCTGGTTCATTCTGTCTGATGTTTTCACAATAAAACGCCTCAGAAACTCAAA

Function

GO: NA

KEGG:

id description
K01017 CHST11; chondroitin 4-sulfotransferase 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1494602 lncRNA downstream 2990 56706784 ~ 56708077 (-) True G1310108
TU1494599 lncRNA downstream 6156 56704698 ~ 56704911 (-) True G1310105
TU1494522 lncRNA downstream 82132 56620934 ~ 56628935 (-) True G1310054
TU1494508 lncRNA downstream 111616 56597418 ~ 56599451 (-) False G1310046
TU1494665 lncRNA upstream 29484 56806019 ~ 56806694 (-) True G1310167
TU1494670 lncRNA upstream 49938 56826473 ~ 56832210 (-) True G1310169
TU1494747 lncRNA upstream 155661 56932196 ~ 56932643 (-) True G1310239
TU1494749 lncRNA upstream 158005 56934540 ~ 56934747 (-) True G1310241
TU1494750 lncRNA upstream 160674 56937209 ~ 56937443 (-) True G1310242
XM_021563721.2 mRNA downstream 53018 56654750 ~ 56658049 (-) True LOC110490369
XM_021563719.2 mRNA downstream 53025 56654750 ~ 56658042 (-) False LOC110490369
XM_021563700.2 mRNA downstream 1087418 55617681 ~ 55623649 (-) True LOC110490355
XM_021563699.2 mRNA downstream 1106598 55584646 ~ 55604469 (-) True LOC110490354
XM_021563698.2 mRNA downstream 1112398 55584646 ~ 55598669 (-) False LOC110490354
XR_005036133.1 mRNA upstream 3121 56779656 ~ 56782516 (-) True LOC118938817
XM_021563714.2 mRNA upstream 18815 56795350 ~ 56802777 (-) True LOC110490365
XM_036944732.1 mRNA upstream 55790 56832325 ~ 56873633 (-) False LOC110490371
XM_021563727.2 mRNA upstream 55790 56832325 ~ 56875598 (-) False LOC110490371
XM_021563729.2 mRNA upstream 55790 56832325 ~ 56875598 (-) False LOC110490371
TU1493546 other downstream 656003 56054491 ~ 56055064 (-) True G1309187
TU1493247 other downstream 963314 55746285 ~ 55747753 (-) True G1308906
TU1493163 other downstream 1154493 55556232 ~ 55556574 (-) True G1308831
TU1493091 other downstream 1291822 55418323 ~ 55419245 (-) True LOC110490757
TU1492936 other downstream 1558956 55148775 ~ 55152111 (-) True LOC110490337
TU1494769 other upstream 195206 56971741 ~ 56973518 (-) True G1310261
TU1495171 other upstream 349279 57125814 ~ 57143499 (-) True LOC110490385
TU1495287 other upstream 466145 57242680 ~ 57247843 (-) False LOC110490387
TU1495288 other upstream 466145 57242680 ~ 57247779 (-) True LOC110490387
TU1495318 other upstream 602304 57378839 ~ 57441427 (-) True G1310744

Expression Profile