RNA id: XM_036944732.1


Basic Information

Item Value
RNA id XM_036944732.1
length 5094
RNA type mRNA
GC content 0.45
exon number 18
gene id LOC110490371
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 56832325 ~ 56875598 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttagcattctggtaagtTATGTTTTTGGGGCTTTGAATAttagggctatataaataaccctctagtcaacttgtgcaatagaTAACGCAGATCTCGTTCATCATTTTGCATGTTAGATCATttttcattatgaagcttaccagtATTAGTTTCGCAAAACAGGGGTTTGAGGCAGTCACGTGTGTTTGTTTATAAAGAAGCACAACGAGCAATATGGGAGCTTTGTAAGAAACATCTTGGTGGACAAACCCAATGACCAGTCCTCCAGGTGGTCGTCTGAGAGCAACTACCCTCCACAGTACTTAATGTTGAAATTGGAACGGCCATCAATCGTTCAGAGCATCACCTTTGGGAAGTATGAGAAGACTCACGTGTGTAACCTGAAGAAGTTCAAAGTGTTTGGTGGGATGAGTGAAGAGAACATGACAGAACTCCTGTCCAGTGGCCTGAAAAATGACTACAACAAGGAGACCTTCACCTTGAAGCACAAGATTGACGAACAGATGTTTCCCTGCAGATTTGTTAAAATAGtgccTCTGATGTCTTGGGGGCCCAGTTTTAACTTCAGTATCTGGTACATTGAGCTGCATGGCATAGAGGAACCTGACTTAGTGCAGCCCTGCCTTAACTGGTACAGCAAGTACCGGGAACAGGAAGCGATCCGCCTGTGCCTGAAGCACTTCCGGCAGCATAACTACACAGAAGCCTTTGAGTCGCTGCAGAAGAAGACACGCATCGCGTTGGAACACCAAATGCTGACACACCTCCATGACCGTCTGGTACTCCGGGGAGACTTTGATGCCTGTGAGGAGCTCATCGACAAAGCCGTCAAAGACGGTTTATTTAACCAGTACATCAGCCAGCAAGAGTACAAGCCAAGATGGAGTCAGATCATCCCTAAGAGTAACAAAGGTACAGCCTCGCAAGAGCCAAGCCCAGATGACATGAACAGTGAGACAAGCTACTCAAGTAATGAGGACGACAACAGACCAGGGATGAGGGGAGGTCATCAGATGGTCATCGACGTTCAGACAGAGACGGTGTATCTTTTTGGGGGCTGGGACGGCACACAGGACCTGGCTGACTTCTGGGCCTACAGTGTTCAGGAGAACCAGTGGATCTGCATCTCCAGAGACACAGAGAAGGAGAGTGGTCCCAGTGCGCGGTCCTGTCACAAGATGTGCATCGACAGTCAGCGGCGGCAGATCTACACACTCGGCCGCTACCTAGACTCCAGCGTCAGGAACAGCAAGTCTCTGAAGAGTGACTTCTACCGCTACGATGTCGACGCTAACACCTGGACACTGCTCAGCGAGGACACGTCAGCCGACGGCGGGCCCAAGCTCGTCTTTGACCACCAGATGTGTATGGACTCGGAGAAGCACATGATCTATACGTTTGGCGGACGGATTCTGATGTGTAACGGCAGTGTGGAGGACAGCAGGACGTCCGAGCCCCAGTTCAGTGGGCTGTATGCCTTCCACTGCCAGGCCGGAACATGGAGCCTGCTCAGAGAAGACTCCTGCAACGCTGGGCCTGAGGATGTCCAGTCACGCATCGGACACTGCATGCTCTTCCACACTaGGAATCGTTGTCTGTATGTGTTCGGAGGTCAAAGGTCAAAGACGTACCTGAATGACTTCTTCAGCTACGACGTGGACGGGGACCATGTGGAGATCATCTCAGACGGAACCAAGAAGGACTCCGGCATGGTGCCGATGACGGGCTTCACCCAGAGGGCCACCATAGACCCAGAGCTGAATGAGATCCACGTCCTGTCTGGCCTCAGCAAGGATAAGGACAAACGAGAGGAGAACGTTCGTAACTCCTTCTGGATCTATGACATCGCACGCAACAACTGGTCGTGTGTGTATAAGAATGACCAGGCGGTGAAGGAGAACCCCAGTAAAGCTCTACAGGAGGAGGAGCCCTGTCCACGCTTCGCACACCAGCTGGTCTACGACGAAATGCACAAgGTACACTACCTGTTTGGAGGAAACCCAGGGAAGTCGTGCTCTCCTAAGATGCGTCTGGATGACTTCTGGTCCCTCAAGCTGTGTCGCCCCTCCAAGGAGTACCTGCTCCGACACTGCAGATACCTAATCAGGAAGTACAGGTTTGAGGAGAAGGCCCAGTCAGAGCCTCTGAATGCTCTGAAGTACCTGCAgaacgacctctctctgaccgtgGACCACACCAACCCTGATGAGACCAAAGAGTTCCAGCTCCTGCCCTCGGCTCTCTTCAAGTCTAGCTCTGACTTCATCCCTCTGGGTTTCTCAGACGTGGACCAGACGTATGCCCAGCGCACGCAGCTCTTTGACATGCTCGTCAACTTCTTCCCGGACACCATGACCCCACCCAAGGGTAACCTCGTTGACCTCATCACACTCTAGCCCCGCCCCACAACCCTATGCACCACCACCATAAGCCAATAAGACTCTGATTGGCCGGCCCAAAGCCAAACTTAATATTTTTCTACACTTGACCCTTCCAAATTCAGTGGTGCTCTGCTCGCGGACTGCACTTGTTGACCCCCTCTATAGGACGTTGGTTCTTCAACAACTAAAACGGAAAATGAGGGTCAGGCCACTTGTGATCTAAAGGGGTTGATACTGAATATCACTGTGTGAAAAAGAAGAAAATAAACTCCTGATAGTCTTTGTTTAataaactgatttaacagggcaAAAATAACCCAGAATTCTGCCAAACATATCTGTGATAACTGATTTGATTTGTGAGGTTTACATTACTTTTACACGCTGCGTTTGAGTTTGCTTGGCATTAGTAGCCTGTTAGATCAAGGAGGAGTCTCTTATTTTCCGCTCGGTCTTGCATCCGTCTCTCtctgacactcactcacacaaaccTGCTTGTGAAAGTAGTTGTTACGTAATGACACCCTGTCAGTGCGTTGTACGTTGAATATACCGTCAACCAAGTTCATGCTTTTGTTTGCTTGCTCTGCCTGTATTATTGGTGGCCATATTATATACCCCATATTTATAATTGTCTGCCATGCTGTTTCACACTGTGTCAAAATGTTGATTGTGTTATATAGAAACAATAGAATAATGATCCTAAGAGACAATTTATATGTCAAATGAAGTTAAGTCAATTAAATCCTCTATCAATGTAAAATTCAGTCATGAGTTTGGGGGGAAAACATTGTCAAGTTGTCAAAAGCCTGGGATTCTGGTAATGGCTACTGTAGCTTTAGTGTGATGTAACCATGGTTATGTCACTGAGGCATGGTGGGAAATGTAGTCTCCAAGTATGAATGTTATTTTTTAAACTCACTCCCCATCTTGTAAGAGAACTGCAACATGATGGTTCTGCTGTATCAGGGAGTTTTTTTAATGTACAAACACACATCTGTACACATATGATCTCATTGGCTGGGATGTATCTCACTTTGACGATGGAAGTTATTTTATGGAAGGAAGAATGAATGATTGCTTTCATTGAGGGAGAGCCCAGTCTCCCCCTTAAGAGATGGCCTGATTACTgggttctctctgtttctcatgcAAACAGTGATGACAGGACATTCTTCATTTCTGACCTAAAGAAATACAGAACACTAGATTTCATTCTTACTCAGAATAAGGCGATAGGAGCATTTTACAAGTGATCTCTAACACCAAGTTATCAAATGGTATCTGTCTTGTGGCTCCAGCCAAAGTTTTAATGTACAGGAAATGTTTTTGATTGGTTCATAATCATTATGCTGGAACTGAGGATGCCCTTTGATatagcttgtgtgtgtttgtctcggATCGCCAGGGTATTTTGTCTAGTCCACCTGTGTAACATAATACAAACATTTGCCTCATATTGTTTTTCCATTAATCTCAGTAGGAGAGATGATTGAAGTGATCCCCTTTTCCCTCCTCAAGAATAGTAGCAGCCTAGTCTTCCATTAATCTCAGTAGGAGAGATGATTGAATTGATCCCCTTTTCCCTCCTCAAGAATAGTAGCAGCCTAGTCTTCCATTACATTGTGTGTATTGTCTATATATTTAGCATTTTTCTGAGACAGCTGTACAGTATGCAGAGTACACTCTAGGCAAAGGCCTATGGAGTCTGTGAAATATCCATCCCCATTTGTTTCGAGATCAATCAACTCCACTATCAGAtaaccagagagggagggactatTCACATTCAAGGAGACAAACACTTAGTGCTTGAGTCGTGTCGGGTGGTAGAGCCAAACTTTAGACATGCTTTTTCTTGTCAAATCCTTACAAAATCCTTGATCAAAATCCTAATCAAATTGGCAGATTGTACACTACGTCCCAATAGATTCATTACATCTGGTTCAAGACTTCTGATCTTATTGTTAGGTGAGTGATCAGATCCGATTTCTCTGTTCGTTTGCACTCATGTCCTCAGTAATCAGAATTAGATTAATTTGAATCACAATCATTTCTGTGTGCGTTTGCTGCTTGTGTGCAAGGTGCACACCCCTGTAtgcttacagtgtgtgtgtgtgtgtgtgtgtgtttgtgcttgtttgtgtcTGTTTGCTAATGGTTGTCTTCTGCTGCCACCATATTAAGCTTAGTAGATATTAGCTCTCTGACCTGGGATCCAGAGAGAAAGTGTCATACTTACCATCATAGATTTGTAATAAAACCTGTTATTTAGGCCGTACTCATTATTTATGGTCGTTGTCACAGAATAGAAGACTTTTGAGATTGACTTTTGCGGTGGTTTCTTTTTTTGTCAGAAATAAAAGATAAGCTTTAAGAAAACATGAAAGAAGCACCTTTgcagaaaatatatatatcacaatgccaaatacattttatttttgggAGCGGAAGGAAATTATAATTTTCAGGTAAATGGAATGTTCTTCATCTGCACCCTCTTCTCCCCTACTGGGACTCATGAGTATGTGGGGTACTCTAGAGTGCGTGAATGAGCACTACTCTGTGGATAACGTGAATGTGTAGAGAGCCTATTGTAGAATTGCATTGTATGTAATGTACATAACGAATAAAGATTGTATTTTGTTCAGGTTTTCATAAATAAATGACTCCGGTCTTTTGATTTGTTTGTAACCAGTTGGGATGCAActa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1494670 lncRNA downstream 115 56826473 ~ 56832210 (-) True G1310169
TU1494665 lncRNA downstream 25631 56806019 ~ 56806694 (-) True G1310167
TU1494602 lncRNA downstream 124248 56706784 ~ 56708077 (-) True G1310108
TU1494599 lncRNA downstream 127414 56704698 ~ 56704911 (-) True G1310105
TU1494522 lncRNA downstream 203390 56620934 ~ 56628935 (-) True G1310054
TU1494747 lncRNA upstream 58563 56932196 ~ 56932643 (-) True G1310239
TU1494749 lncRNA upstream 60907 56934540 ~ 56934747 (-) True G1310241
TU1494750 lncRNA upstream 63576 56937209 ~ 56937443 (-) True G1310242
TU1494751 lncRNA upstream 64550 56938183 ~ 56938436 (-) True G1310243
TU1494752 lncRNA upstream 65358 56938991 ~ 56939383 (-) True G1310244
XM_021563714.2 mRNA downstream 29548 56795350 ~ 56802777 (-) True LOC110490365
XR_005036133.1 mRNA downstream 49809 56779656 ~ 56782516 (-) True LOC118938817
XM_021563717.2 mRNA downstream 55790 56711067 ~ 56776535 (-) False LOC110490368
XM_021563736.2 mRNA upstream 156511 57030144 ~ 57037049 (-) False LOC110490376
XM_021563739.2 mRNA upstream 156511 57030144 ~ 57037055 (-) True LOC110490376
LOC110490760 mRNA upstream 163881 57037514 ~ 57039997 (-) True LOC110490760
XM_021563740.2 mRNA upstream 166155 57039788 ~ 57050771 (-) True LOC110490378
XM_021563741.2 mRNA upstream 179338 57052971 ~ 57058823 (-) True LOC110490379
TU1493546 other downstream 777261 56054491 ~ 56055064 (-) True G1309187
TU1493247 other downstream 1084572 55746285 ~ 55747753 (-) True G1308906
TU1493163 other downstream 1275751 55556232 ~ 55556574 (-) True G1308831
TU1493091 other downstream 1413080 55418323 ~ 55419245 (-) True LOC110490757
TU1492936 other downstream 1680214 55148775 ~ 55152111 (-) True LOC110490337
TU1494769 other upstream 98108 56971741 ~ 56973518 (-) True G1310261
TU1495171 other upstream 252181 57125814 ~ 57143499 (-) True LOC110490385
TU1495287 other upstream 369047 57242680 ~ 57247843 (-) False LOC110490387
TU1495288 other upstream 369047 57242680 ~ 57247779 (-) True LOC110490387
TU1495318 other upstream 505206 57378839 ~ 57441427 (-) True G1310744

Expression Profile