RNA id: XM_036944737.1


Basic Information

Item Value
RNA id XM_036944737.1
length 480
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC110490380
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 57066743 ~ 57068082 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCACCACCATCACTTTGGTGATGAAGGAGGAGGCAACAGACTACTTGGAGCTGGAGACCATCAAGAACCTTGTGAGGAAATACTCCCAGTTCATCAACTTCCCCATCTACGTATGGAGTAGCAAGACTGAGACTGTAGAGGAGCCTATTGATGAGGATGAGACAGAAGCAGATAAGGATGAAGACCACGATGAGgttgaggtggaggaagaggacaaACTAAAGAAGACAGTGTGGGAGTGGGAGCTGATGAATGACATCAAGCCCATCTGGCAGAGGCCTGccaaggaggtggaggaggatgatgagTACAAGACCTTCTCCAGGGACACAGACAAGCCCATCTCCCACTTACAGCAGAGGGGGAGGTCACCTTCAAGTCCATCCTCTTTGTGCCTGCCGCAGCTCCCCGGGGACTCTTCGAGTACGGTTCTAAGAAGAACGACTTAATTAAGGTGCCACAGCAATGATTAGGTTAC

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0035889 otolith tethering biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1495183 lncRNA downstream 745 57063362 ~ 57065998 (-) True G1310620
TU1495182 lncRNA downstream 2235 57063362 ~ 57064508 (-) False G1310620
TU1494816 lncRNA downstream 50905 57015503 ~ 57015838 (-) True G1310306
TU1494799 lncRNA downstream 68806 56996170 ~ 56997937 (-) True G1310289
TU1494754 lncRNA downstream 125477 56940809 ~ 56941266 (-) True G1310246
TU1495193 lncRNA upstream 10872 57078954 ~ 57079259 (-) True G1310630
TU1495194 lncRNA upstream 11342 57079424 ~ 57079856 (-) True G1310631
TU1495195 lncRNA upstream 12115 57080197 ~ 57080469 (-) True G1310632
TU1495197 lncRNA upstream 14626 57082708 ~ 57083157 (-) True G1310634
TU1495207 lncRNA upstream 42099 57110181 ~ 57110387 (-) True G1310644
XM_021563741.2 mRNA downstream 7920 57052971 ~ 57058823 (-) True LOC110490379
trnay-gua-7 mRNA downstream 8522 57058134 ~ 57058221 (-) True trnay-gua-7
trnay-gua-6 mRNA downstream 9174 57057482 ~ 57057569 (-) True trnay-gua-6
trnay-gua-5 mRNA downstream 9811 57056845 ~ 57056932 (-) True trnay-gua-5
XM_021563740.2 mRNA downstream 15972 57039788 ~ 57050771 (-) True LOC110490378
XM_036944738.1 mRNA upstream 28083 57096165 ~ 57101581 (-) False LOC110490383
XM_021563748.2 mRNA upstream 28083 57096165 ~ 57101841 (-) False LOC110490383
XM_021563747.2 mRNA upstream 28083 57096165 ~ 57101944 (-) True LOC110490383
XM_021563753.2 mRNA upstream 57701 57125783 ~ 57143495 (-) False LOC110490385
XM_036944750.1 mRNA upstream 163099 57231181 ~ 57245939 (-) False LOC110490387
TU1494769 other downstream 93225 56971741 ~ 56973518 (-) True G1310261
TU1493546 other downstream 1011679 56054491 ~ 56055064 (-) True G1309187
TU1493247 other downstream 1318990 55746285 ~ 55747753 (-) True G1308906
TU1493163 other downstream 1510169 55556232 ~ 55556574 (-) True G1308831
TU1493091 other downstream 1647498 55418323 ~ 55419245 (-) True LOC110490757
TU1495171 other upstream 57732 57125814 ~ 57143499 (-) True LOC110490385
TU1495287 other upstream 174598 57242680 ~ 57247843 (-) False LOC110490387
TU1495288 other upstream 174598 57242680 ~ 57247779 (-) True LOC110490387
TU1495318 other upstream 310757 57378839 ~ 57441427 (-) True G1310744
TU1496557 other upstream 1080904 58148986 ~ 58149397 (-) True G1311818

Expression Profile