RNA id: TCONS_00044974


Basic Information

Item Value
RNA id TCONS_00044974
length 1030
lncRNA type sense_over
GC content 0.49
exon number 8
gene id XLOC_022214
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 14808221 ~ 14990921 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGGCTGCCTCAAAGCTGTCTGGATGGACCAGCAATCTCATAGACATTGTGATGGCACACCATTTCAGCACGGATGAGCTGACGGAGAACCAGGAGATTATCCAAACATACCGCCTGCACATCGCTCAGGACATCAATCAGGATAACCTGGCGCTCTTCTGCCAGTCCTACAACAGCGGTAGAGGCTGTGGTTGAATGCAACTCGAGGCTTAACCCAACCAAGACTACTTTACTCAAGATGGCAGATTGTGGTGGACTTCCTCAAGTTGTCCAACCGGGTAAACTTGCTGAGGCTTTCAAGTACTTTGTCCAGGGAATGGGCTACATGCCCACTGCCAGCATGACCCGATTGGCACGCTCTCGCACTCACTCTGCCTCCAGCATGGGCTCAGGGGACGGTTCGCGCAGCCGCACACAGACCAGTTCACAGATGGAGGGCGCCACTGGCGGCCCCGCCCTCGACAACCAGAACAGAACCATGGAGGTGTCCTGCTAAACCTCCCAGAACCAAGCCCCCATTTTATTTGGGatcattggtgtgtgtgtgacccTTTTTTGTTCCCCCCCACTCTGTCGTCTCATTCTCTCGTGGCCAGAGAGTGCTGGTCTAATGAAGGGATGCATTGTTTGATGTCTAGTAATCCATGTATTTAACATGTTGGAATATTTCTCCACTGCATGGACGCACACTAATCTTCTGTTGATGTTTTTAATCTTGATTGGCTTTCTACTTTCTTACTCCATTCTTTTATAAACACTCCCCGATACGCTTTTTCGTGTATATTTTTTGGTGGCGGCTGCTGTATATTGAACATTCAGAGGGTATTCTCGTGTGTAGCGGGAGAGTTTTTGTTCCCTCTCTTGCTCTATCTAAGGTCTTCCTGCCCCTTGTGTTTACTAGAGACGACCAAACCACTTCAATTCCTTCCCGTCATCGAATGTTTCTTTCACTGCTTCGTTTTCTGTGCATTTTAAATGGTTTCTACTGCTCTTGCTGGATGGCAGCAGCTGgttggatttgatttgtaat

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
ko04131 Membrane trafficking

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043849 lncRNA downstream 7698 14819407 ~ 14825434 (-) False XLOC_022214
TCONS_00044973 lncRNA downstream 94746 14735335 ~ 14738386 (-) True XLOC_022212
TCONS_00044972 lncRNA downstream 249593 14574498 ~ 14583539 (-) True XLOC_022211
TCONS_00043844 lncRNA downstream 417919 14407888 ~ 14415213 (-) True XLOC_022210
TCONS_00044971 lncRNA downstream 1008940 13818507 ~ 13824192 (-) True XLOC_022203
TCONS_00043858 lncRNA upstream 51506 14910108 ~ 14990921 (-) False XLOC_022214
TCONS_00043857 lncRNA upstream 51506 14910108 ~ 14990921 (-) True XLOC_022214
TCONS_00044718 lncRNA upstream 573811 15432413 ~ 15563597 (-) True XLOC_022219
TCONS_00044719 lncRNA upstream 831929 15690531 ~ 15697049 (-) True XLOC_022220
TCONS_00044976 lncRNA upstream 837925 15696527 ~ 15764287 (-) False XLOC_022221
TCONS_00043847 mRNA downstream 2505 14808221 ~ 14830627 (-) False XLOC_022214
TCONS_00043848 mRNA downstream 7682 14808226 ~ 14825450 (-) False XLOC_022214
TCONS_00043845 mRNA downstream 63609 14743087 ~ 14769523 (-) False XLOC_022213
TCONS_00043846 mRNA downstream 66230 14743455 ~ 14766902 (-) True XLOC_022213
TCONS_00043843 mRNA downstream 429193 14265122 ~ 14403939 (-) True XLOC_022209
TCONS_00043856 mRNA upstream 3085 14861687 ~ 14990865 (-) False XLOC_022214
TCONS_00043859 mRNA upstream 134198 14992800 ~ 15036789 (-) False XLOC_022215
TCONS_00043861 mRNA upstream 187942 15046544 ~ 15090782 (-) False XLOC_022216
TCONS_00043862 mRNA upstream 189450 15048052 ~ 15088316 (-) True XLOC_022216
TCONS_00043864 mRNA upstream 345220 15203822 ~ 15330168 (-) False XLOC_022218
TCONS_00043841 other downstream 843650 13989364 ~ 13989482 (-) True XLOC_022207
TCONS_00043838 other downstream 958532 13861420 ~ 13874600 (-) True XLOC_022205
TCONS_00043837 other downstream 975615 13854969 ~ 13857517 (-) False XLOC_022205
TCONS_00043832 other downstream 1118632 13714386 ~ 13714500 (-) True XLOC_022201
TCONS_00043831 other downstream 1197225 13635793 ~ 13635907 (-) True XLOC_022200
TCONS_00043860 other upstream 142757 15001359 ~ 15014574 (-) True XLOC_022215
TCONS_00043863 other upstream 249246 15107848 ~ 15107962 (-) True XLOC_022217
TCONS_00043872 other upstream 1087552 15946154 ~ 15951976 (-) True XLOC_022224
TCONS_00043875 other upstream 1702631 16561233 ~ 16562161 (-) True XLOC_022227
TCONS_00043880 other upstream 1837808 16696410 ~ 16709231 (-) False XLOC_022231

Expression Profile

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