RNA id: TCONS_00043857


Basic Information

Item Value
RNA id TCONS_00043857
length 724
lncRNA type retained_intron
GC content 0.48
exon number 3
gene id XLOC_022214
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 14808221 ~ 14990921 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATCTGTCTGGTTGTCAGTCAGTTCTCGTGAGCTCCTCCTCCGGCAGCGCGAGGAATCAACCACAGCACCGCCGCACGCGAGAGCACAGCACACAAATCCGCCGAGCACACAGTACAGTACAGCACGCCGAACAACTCTCCTCTGCTCCTGTTCACTGCTCATCCAGCACGCTTAGATCTTCATCAACGTGACGGGCAGCTGTCAGGCTTGATGATGGATGAGTTACAGGATGTGCAGTTGACCGAGATCAAACCCCTCTTGACGGACAAGAATGGACAGAACTTCCAGGACTTTGATTGTCAGGTAAGAGTCTTTTTATATACTTCACATCACCTCTTGAAGCATTCGCTCGCAATCATTAATCTACTCTTCCTGCATTATTGCTAAATTCCCAGCATAGTGTGATGGTGAAAGATTCCTGACCCCTACTTCACTGTTGAGCAGAGAAATTCACTCTGGACTCTTTGTTTATCTGTGGGTGTGTGGGAGGCTTTGTGGGTGGTGAGTTGAGCTGAAAGAGAGCAAGGCTGtcgagattcaacaaggtgctggaaactttcctcagagattttggttcagtagatttgagctttgtgacatAATGCAATATCCTGGAGGAAGCAGCCCTCACAACGGTGGTTTCATTGCGCTCAAACAAAATGGATGTGGTCTGCAACAATACTTAAGAAGACTCGGTTGGAACTAAATCACTCAAGGTttgc

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-5606 Is expressed in immature eye; nervous system; otic vesicle; and thymus. Orthologous to human NDRG3 (NDRG family member 3).

Ensembl:

ensembl_id ENSDART00000144579

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044975 lncRNA downstream 42972 14833132 ~ 14867136 (-) False XLOC_022214
TCONS_00044974 lncRNA downstream 51506 14833132 ~ 14858602 (-) False XLOC_022214
TCONS_00043853 lncRNA downstream 62763 14833132 ~ 14847345 (-) False XLOC_022214
TCONS_00043854 lncRNA downstream 62763 14833473 ~ 14847345 (-) False XLOC_022214
TCONS_00043852 lncRNA downstream 63270 14833132 ~ 14846838 (-) False XLOC_022214
TCONS_00044718 lncRNA upstream 441492 15432413 ~ 15563597 (-) True XLOC_022219
TCONS_00044719 lncRNA upstream 699610 15690531 ~ 15697049 (-) True XLOC_022220
TCONS_00044976 lncRNA upstream 705606 15696527 ~ 15764287 (-) False XLOC_022221
TCONS_00044720 lncRNA upstream 756444 15747365 ~ 15764318 (-) True XLOC_022221
TCONS_00044977 lncRNA upstream 1492151 16483072 ~ 16485615 (-) False XLOC_022225
TCONS_00043847 mRNA downstream 79481 14808221 ~ 14830627 (-) False XLOC_022214
TCONS_00043848 mRNA downstream 84658 14808226 ~ 14825450 (-) False XLOC_022214
TCONS_00043845 mRNA downstream 140585 14743087 ~ 14769523 (-) False XLOC_022213
TCONS_00043846 mRNA downstream 143206 14743455 ~ 14766902 (-) True XLOC_022213
TCONS_00043843 mRNA downstream 506169 14265122 ~ 14403939 (-) True XLOC_022209
TCONS_00043859 mRNA upstream 1879 14992800 ~ 15036789 (-) False XLOC_022215
TCONS_00043861 mRNA upstream 55623 15046544 ~ 15090782 (-) False XLOC_022216
TCONS_00043862 mRNA upstream 57131 15048052 ~ 15088316 (-) True XLOC_022216
TCONS_00043864 mRNA upstream 212901 15203822 ~ 15330168 (-) False XLOC_022218
TCONS_00043865 mRNA upstream 214749 15205670 ~ 15216654 (-) False XLOC_022218
TCONS_00043855 other downstream 51506 14833663 ~ 14858602 (-) False XLOC_022214
TCONS_00043841 other downstream 920626 13989364 ~ 13989482 (-) True XLOC_022207
TCONS_00043838 other downstream 1035508 13861420 ~ 13874600 (-) True XLOC_022205
TCONS_00043837 other downstream 1052591 13854969 ~ 13857517 (-) False XLOC_022205
TCONS_00043832 other downstream 1195608 13714386 ~ 13714500 (-) True XLOC_022201
TCONS_00043860 other upstream 10438 15001359 ~ 15014574 (-) True XLOC_022215
TCONS_00043863 other upstream 116927 15107848 ~ 15107962 (-) True XLOC_022217
TCONS_00043872 other upstream 955233 15946154 ~ 15951976 (-) True XLOC_022224
TCONS_00043875 other upstream 1570312 16561233 ~ 16562161 (-) True XLOC_022227
TCONS_00043880 other upstream 1705489 16696410 ~ 16709231 (-) False XLOC_022231