RNA id: TCONS_00043871


Basic Information

Item Value
RNA id TCONS_00043871
length 817
RNA type mRNA
GC content 0.52
exon number 6
gene id XLOC_022223
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 15899693 ~ 15916391 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACGTTAGCACCAGTGTGTGTGCGAGACTGCAGAAACATGGGGGAAGCGGAGACTGTGCCATCAGACGAAAAACCCGCAGAAACTGGCGTCTGTACAGCCGAAGAATCGATTGTATGGAGTCAGGAAGTCGAAGTGTGTCTTTTTCACGCCATGCTCGGTCACAAACCCGTAGGGGTGAATCGTCATTTCCACATGATCTGTATTCGTGATAAGTTCAGTCAAAATATCGGCAGACAGGTGTCATCTAAAGTCATCTGGGATCACCTGAGTACTATGTATGACATGCAGGCTCTGCATGAATCAGAAATACTTCCATTTCCAAACTCTGAAAAGAGCTTTGTGCTTCCAGAAGAGATCATACAGGACGTCAAGGAAGGTAAAGTGGGATCTGAAGATGACGTGAAAGAGGAGTTCAAAGAAGAGAGCGACCCTCCTGCAACCCATGAAGAAGGTCTGGGTCCCAGTATGGCTGGCCAGGATTTTGCGAGGTATGGACAGAAGAAAACGTTTTGCTCTGTTCCAAAACTCCAGCTTGAGCTCAGTACAGGCCAGCTCATTACCAGAGGCCTCTGTAGACAGCCTTCAGAGACCTCTGACCATGCAGCAATTCCTCCGTGAAGACGTCGGAGAGATCGAGCAGCGGCCGAGAGAAAGAGCGGGCCGAGAAGGGGGCCTCAGGTGAGTCGGGCAGCGGGATGAAGGAATCGACTGGGGAAAAAAGGAAGAGGAGCCGAGCCGTGGAGAAGGTGATGAACTCCAGCAACCCCTCCAGTCCCGGAGGAGCCAAACGCCGCAGGACGTAACCTTAGCCGGCTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016573 histone acetylation biological_process
GO:0035267 NuA4 histone acetyltransferase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043189 H4/H2A histone acetyltransferase complex cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-1698 Predicted to be involved in histone acetylation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NuA4 histone acetyltransferase complex. Orthologous to human MRGBP (MRG domain binding protein).

Ensembl:

ensembl_id ENSDART00000134096

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044720 lncRNA downstream 135990 15747365 ~ 15764318 (-) True XLOC_022221
TCONS_00044976 lncRNA downstream 136021 15696527 ~ 15764287 (-) False XLOC_022221
TCONS_00044719 lncRNA downstream 203259 15690531 ~ 15697049 (-) True XLOC_022220
TCONS_00044718 lncRNA downstream 336711 15432413 ~ 15563597 (-) True XLOC_022219
TCONS_00043857 lncRNA downstream 909387 14910108 ~ 14990921 (-) True XLOC_022214
TCONS_00044977 lncRNA upstream 566756 16483072 ~ 16485615 (-) False XLOC_022225
TCONS_00044721 lncRNA upstream 566756 16483072 ~ 16485848 (-) True XLOC_022225
TCONS_00044722 lncRNA upstream 600666 16516982 ~ 16518846 (-) True XLOC_022226
TCONS_00044978 lncRNA upstream 727808 16644124 ~ 16648039 (-) True XLOC_022228
TCONS_00044723 lncRNA upstream 777262 16693578 ~ 16709238 (-) False XLOC_022231
TCONS_00043868 mRNA downstream 21429 15850938 ~ 15878879 (-) True XLOC_022222
TCONS_00043867 mRNA downstream 570078 15284576 ~ 15330230 (-) True XLOC_022218
TCONS_00043864 mRNA downstream 570140 15203822 ~ 15330168 (-) False XLOC_022218
TCONS_00043873 mRNA upstream 563173 16479489 ~ 16484383 (-) False XLOC_022225
TCONS_00043874 mRNA upstream 566553 16482869 ~ 16485190 (-) False XLOC_022225
TCONS_00043876 mRNA upstream 732305 16648621 ~ 16682186 (-) False XLOC_022229
TCONS_00043877 mRNA upstream 733686 16650002 ~ 16666583 (-) False XLOC_022229
TCONS_00043878 mRNA upstream 735768 16652084 ~ 16666640 (-) True XLOC_022229
TCONS_00043863 other downstream 792346 15107848 ~ 15107962 (-) True XLOC_022217
TCONS_00043860 other downstream 885734 15001359 ~ 15014574 (-) True XLOC_022215
TCONS_00043855 other downstream 1041706 14833663 ~ 14858602 (-) False XLOC_022214
TCONS_00043841 other downstream 1910826 13989364 ~ 13989482 (-) True XLOC_022207
TCONS_00043838 other downstream 2025708 13861420 ~ 13874600 (-) True XLOC_022205
TCONS_00043872 other upstream 29838 15946154 ~ 15951976 (-) True XLOC_022224
TCONS_00043875 other upstream 644917 16561233 ~ 16562161 (-) True XLOC_022227
TCONS_00043880 other upstream 780094 16696410 ~ 16709231 (-) False XLOC_022231
TCONS_00043881 other upstream 780203 16696519 ~ 16709164 (-) True XLOC_022231
TCONS_00043886 other upstream 828466 16744782 ~ 16746423 (-) True XLOC_022233

Expression Profile

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