RNA id: TCONS_00044721


Basic Information

Item Value
RNA id TCONS_00044721
length 2321
lncRNA type read_through
GC content 0.37
exon number 2
gene id XLOC_022225
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16479489 ~ 16485848 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACTTTTTTTCCTGAAGGGGCCAAGGCGGGGAGATTGAACGTGATGCACTCATTTGAATGCTGCATCCAGCTCTGCATTTTCGACCCGCCCCTGCTCTGAAGCTGACTGGCTCCGACCGATCGTGACGTCGCTCCACTTGCGCAAACCTAACCAAAGAGCTTCTTTGACCTAACCAACGATTGCAACGAACACTAGCCAATCAGAGGCAGGTCTTCGCGGAATGCGCGTAGGAAAAGTAAACAAGCTTCTCTTTCGTGGCAGCTGCATGGGTCGCAGTCCTCGTGGACTGTCTCCGACTCGACTTATCAGAGTTTAAAACGTAAAGGTGGGGGTGAAAGTAGATGTAGTAGAAGCATTCAAATGTTTCATAACTAAATTGCAGGAGATTTGCAGATGACACGAGAGGACCAGCTAGTACGACCACAGCCGATAGTCCAGTGAAAGACCAGGGTTTAGCTAGCAGGTTGATGTTGTTCAACTTTGTTTCTGCTCTAACGTTAAACACAAAGACCAATTATGTTGGCATTGCATTTATTGCTCCCAAATTTTAAACTAATACTTTTAGTATAGAAGTGGAACATGACAAATCCAAATACTAATAGAGTTAGTGATATGGCATGAAGacagaataaataattaattaattttaattaaattaacaaattctTGACTTGTTGACTCAGTTATAATATCTCACAATGTACTTAGTAGTAGTAGGCTTGTGGACTGCATTGCGAAGAAATTTTTCTGTTTCTGATTTCACAAACAGTTTATAATAAATCGCCATATAATATGATCTGACACATTGTAAATAACCTTACACAATTATTTATTCTAAATCACtgtacatttgtttatatttcatgCATTGTTGGTTTGTTAATTCACATGAACCTTTACTTAActgacaaaaatattttcaatggTTTTACTGACCAGTGTAATTATGTATTGTAAATATAAAGAAATTTAGAATTTGCAGGTCATTAAAATCTATTACATAAATTCATGTTTTTCTTATATTCTACAAATATACAGGACATTGAAGGAGATGGCATCCAGAGAGACCTGCAGAATTCCACCATGGGCGTATATGTCATCAACAAGGAGGGTGGAGAAATTGGAGCACATGATGACATTTATGTTGAAGGAGAAATCATTCTGGACAACATTGGATCTGTAGCCCAAGCATCTGCAATGATGCTGGGAGTCATCTATGTAGTGAACTTGGCCTACCCCAAAGAGCTGAAATACTCTTATGAATTCATTCAAAATGTGCTCTTGAAAATGGATGGAGAAAGACTTTCCCCCAAAGTCCTTGGACTAAAGAACAAAATCATTGCTGGACTGTAGGATTTCTTCAGCCGCTCATGTAAACGCTGCTAAGCTGCATTTTTAAATCTGGTTTGGGAGGCGATAGAAAACATATAGTATGATGTAAAATGCAGCCCTAGAAAATgtttcaaactgaaaacaaagtGAGTGGTGGACTGTAATACATAGCCACTGGTGTGAACATTTAAAGTTGTCATTGGATTTAGTGGAATATTCACCTGAAATAAAAATTGCAATCCTGTAAATAGGCCAGGTTTCTATCCACACTCAGCACAAaaagtatccatccatccattaacgCCATATGAATTTTAGAAGTTAAGCGCTTTGAGATAAACAGTTGATGATGTCTGCACCATTAAGGCATTGCATAAGAAGAGGACACAATGAGATGACGTCATTAAAAGAGCTCCAGTCAAAGTTCAAACAATGGGGAACCATGTGTAAAACATGAAATTATGACAATTCTTGTTAGTTTCATGTGAGAATGTTACAGCCTCCTCATTGCTTCACACAGATGTGATGTTTTCATTtgacactatttttattttttttagagtaGCTTAAGCTTCAGTGGACATTTAAGTCacgtttcattttatttagtaagTCTGTTTCCATATTTATACACCAACTTTTTCACCTCAGCCAAACATAAAATCTATTTTGTTATataacaatcttttttttaattagtatttttttaatgtaactacaGTTTTTTGTAATTTCAGCATCAGGTCCTCAGTGTGCACTGTGTTGCAGCTGTGGACAGTTCTTGTACTATAGCATTTTTTGTTCTGTATAGTACTGGTGTATTTTGTTACTTGTATATGTTTTGTTGTGTGTTAAAAGGCTTCCCTCCAAagttctcctgtgtgtgtatgtatacagccACTATTGTGAATATTTAAAGCTGCACTAATGATGTTTTGGAATATTGACTCAATGTAAGTTTGCAGTTAAATATAATCTCATGCAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044720 lncRNA downstream 718754 15747365 ~ 15764318 (-) True XLOC_022221
TCONS_00044976 lncRNA downstream 718785 15696527 ~ 15764287 (-) False XLOC_022221
TCONS_00044719 lncRNA downstream 786023 15690531 ~ 15697049 (-) True XLOC_022220
TCONS_00044718 lncRNA downstream 919475 15432413 ~ 15563597 (-) True XLOC_022219
TCONS_00043857 lncRNA downstream 1492151 14910108 ~ 14990921 (-) True XLOC_022214
TCONS_00044722 lncRNA upstream 31134 16516982 ~ 16518846 (-) True XLOC_022226
TCONS_00044978 lncRNA upstream 158276 16644124 ~ 16648039 (-) True XLOC_022228
TCONS_00044723 lncRNA upstream 207730 16693578 ~ 16709238 (-) False XLOC_022231
TCONS_00044979 lncRNA upstream 210276 16696124 ~ 16709130 (-) False XLOC_022231
TCONS_00043884 lncRNA upstream 244671 16730519 ~ 16733929 (-) False XLOC_022232
TCONS_00043869 mRNA downstream 566681 15899693 ~ 15916391 (-) False XLOC_022223
TCONS_00043870 mRNA downstream 566681 15899973 ~ 15916391 (-) False XLOC_022223
TCONS_00043871 mRNA downstream 566756 15900308 ~ 15916316 (-) True XLOC_022223
TCONS_00043868 mRNA downstream 604193 15850938 ~ 15878879 (-) True XLOC_022222
TCONS_00043867 mRNA downstream 1152842 15284576 ~ 15330230 (-) True XLOC_022218
TCONS_00043876 mRNA upstream 162773 16648621 ~ 16682186 (-) False XLOC_022229
TCONS_00043877 mRNA upstream 164154 16650002 ~ 16666583 (-) False XLOC_022229
TCONS_00043878 mRNA upstream 166236 16652084 ~ 16666640 (-) True XLOC_022229
TCONS_00043879 mRNA upstream 202572 16688420 ~ 16692312 (-) True XLOC_022230
TCONS_00043882 mRNA upstream 233895 16719743 ~ 16734009 (-) False XLOC_022232
TCONS_00043872 other downstream 531096 15946154 ~ 15951976 (-) True XLOC_022224
TCONS_00043863 other downstream 1375110 15107848 ~ 15107962 (-) True XLOC_022217
TCONS_00043860 other downstream 1468498 15001359 ~ 15014574 (-) True XLOC_022215
TCONS_00043855 other downstream 1624470 14833663 ~ 14858602 (-) False XLOC_022214
TCONS_00043841 other downstream 2493590 13989364 ~ 13989482 (-) True XLOC_022207
TCONS_00043875 other upstream 75385 16561233 ~ 16562161 (-) True XLOC_022227
TCONS_00043880 other upstream 210562 16696410 ~ 16709231 (-) False XLOC_022231
TCONS_00043881 other upstream 210671 16696519 ~ 16709164 (-) True XLOC_022231
TCONS_00043886 other upstream 258934 16744782 ~ 16746423 (-) True XLOC_022233
TCONS_00043889 other upstream 475421 16961269 ~ 16964105 (-) False XLOC_022237

Expression Profile

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