RNA id: LOC110490497


Basic Information

Item Value
RNA id LOC110490497
length 1297
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110490497
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61068308 ~ 61071015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTCATTTAGCTGGAAAGGAAGCTTCCTCCTCCTAAGGATCAGGGGCCTTCTTGGGCTCTGTTTCATTTTGCTCAGATTACAGAGGCTGGCCCTTTGACTTCACTTGATGTCTGAAGAGATAACAGCTCCTCAGCCATGATCTCTGATGCCCCGTAAAACAAGAAAGACATCTTTGCCAAACTCACAGAAGCCGTCGCTGTTGTTTTTTGATCCACCACTTGATGACGCCAGATACCTCAACGTGCCTCAAGTGAGAGGCGTACTCAATCCCAAGTCATTTCTGGTTGAGGAGAAGCGACAGAACAGCTGCACAACCTGTAGTTCTTGGGTGAGTCCACAGTTTGATCAACTACCGCCCCCTGCACCCAGAGGAAGGCGAGGGAGGAAGAAGTGCCTCTCTGCAACAATAATTCTTGACAGGAGTTCTCAGTTATCCAGAAAAAAAGTTGTATTTGCAAGTTCCAAGCCTTATATTTTCAGAGAAGGTCAACAGTCCAATCTCTCCTTGCAAGCACATAAGGTCAGTTCTCTAAGTACAGAGTACCTAAGTAATCAAGATGAAACGTAGACACCAACACCGATAACTTCTCTCAGGAAAGGGACAGCTGAGAGGAGACGGTTGTCAGAGGTAACACTGGAAGATGCAGCATCAACCTCTAGCAGAGGTTGGGTTCTTAGAACGTCAGCTGCCAATGTTGCCAGACATTGCAAGAGCCCAGCGTCATGCTCTGCTCGGACTCCTGCCTCAGCAACACACCACACCCCTGGCACGGACAATGTCTTGCCCACCTGATGTAGAGACTCCAGAATTACACCATGATGGTAGTTCTTTCTTCGCCTCCTGTTGCCTGCGTCACAGCCGATGACCCCGCCACACACCGTGACTTCAGAGATTTTAGCAACAGACACCCCAGAGAGGGACTATGGAGTTAAGGttacatggaggaggaggaaagggctGATGAGGTTGCTGAGGGACCGAGGTTATCTTTCAAGTGCATAGGCACCGATTAGCATCTAATCAATATAACTGTAAATATTGACATTTTATCATCATGTTCTGCAATTAACACTGAATCGTAGTTAACACCACATGAATACATTAGTCCACTGATTGAAAGTGATATGTTGCAATGACTATAATATTATCGAGTCCACTCAATTGTTTTGCTGCTTGAGATAACTTGGCATGTTGTCCATGTGCAGTTGGTAGTTCAGTCCATTATGGATGCGGCTCTGTCTAGGTTCTTGTTTTCTTTGTACCCTGGGTCcacattaaatattttttttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1499936 lncRNA downstream 33492 61005663 ~ 61034816 (-) True G1314798
TU1499934 lncRNA downstream 58976 61005663 ~ 61009332 (-) False G1314798
TU1499927 lncRNA downstream 73988 60989032 ~ 60994320 (-) True G1314792
TU1499907 lncRNA downstream 122401 60944769 ~ 60945907 (-) True G1314773
TU1499860 lncRNA downstream 227700 60840341 ~ 60840608 (-) True G1314727
TU1499937 lncRNA upstream 16920 61087935 ~ 61090439 (-) True G1314799
TU1500005 lncRNA upstream 117793 61188808 ~ 61194701 (-) True LOC110490506
TU1500046 lncRNA upstream 155548 61226563 ~ 61290216 (-) True G1314876
TU1500158 lncRNA upstream 335866 61406881 ~ 61407401 (-) False G1314961
TU1500153 lncRNA upstream 335931 61406946 ~ 61407401 (-) False G1314961
XM_021563906.2 mRNA downstream 3297 61024646 ~ 61065011 (-) True LOC110490493
XM_021563905.2 mRNA downstream 3619 61024646 ~ 61064689 (-) False LOC110490493
XM_021563907.2 mRNA downstream 25473 61024646 ~ 61042835 (-) False LOC110490493
XM_036944880.1 mRNA downstream 95236 60926634 ~ 60973072 (-) True LOC110490490
XM_036944879.1 mRNA downstream 112836 60926634 ~ 60955472 (-) False LOC110490490
XM_021563913.2 mRNA upstream 4760 61075775 ~ 61080602 (-) False LOC110490496
XM_021563915.2 mRNA upstream 4962 61075977 ~ 61080604 (-) True LOC110490496
XM_036944883.1 mRNA upstream 36098 61107113 ~ 61116948 (-) False LOC110490499
XM_036944884.1 mRNA upstream 36098 61107113 ~ 61116948 (-) False LOC110490499
XM_021563916.2 mRNA upstream 36098 61107113 ~ 61117104 (-) False LOC110490499
TU1499377 other downstream 295820 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 1644001 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 2376926 58689604 ~ 58691382 (-) False G1312023
TU1496820 other downstream 2377294 58689604 ~ 58691014 (-) True G1312023
TU1496827 other downstream 2377951 58634282 ~ 58690357 (-) False G1312023
TU1500688 other upstream 539405 61610420 ~ 61612116 (-) True G1315398
TU1500823 other upstream 763611 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 764363 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 794015 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 794015 61865030 ~ 61891421 (-) False G1315519

Expression Profile