RNA id: XM_021563919.2


Basic Information

Item Value
RNA id XM_021563919.2
length 5845
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC110490501
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61143787 ~ 61177047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtacctatggtgaaaattacaggcctctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtatttccaTGAAAGCTCAATGATCAATGATCTTTTGGCGTACCTCGCCAAAACCAAATTAACTTGAGCAAATGGCCTCTGTCTCACAAGGTCTtgcacaggcagcccaattctgacatttttttcccactaattagtcttttgaccaaatacatttagatattttcacatcagatatttaTCAGAGATGATCTGATTGGGGGGAGACACATTTGTGGAAATATTATCAAAACTGGTCCGCCTGTGCAGCCTTAGTTTTGTAGCTTAACACAGCCTTAGTTTTGTAGCTTTTGTTTTATTCAATAGGTTCTAATCGGTCATTGTTTTGCATGCCCATTACCTGTTGCCTCAGGACAATGCTCCAGTGTTACTGAATGGTAAATGGAGTAACTGAACACTGACCAAGGATGtctaacaggctgactacaccgcgtgcttgagcgttgcaaaataaatttagaaatctgttattcaacgattgcacccacactgctcgtgcgTGCCAACAagtgtctgcgttgccaagggataAAATAGAAATCAGCTATATTTCTGATGCCGAtagcgctgcaagtcctgcctctcccatctccttattggtttatagaagcaggtacccatgtaCCATCTCATTGGTCATACCCACGTGGGTGagtgaaagacgaacgaggtcagtggcggtaatgcacctaatttatgaaagttgccaatgcAATATAAAggcaagagaagaaaaagcctggaaggaacagagatgactagaaacgattcggttgaccgttttatgtgtggattaattggtggaGTAGAGGATCTTGTGCATTtctggtaaaataacaactcaatgtttatatcccaggacacattagctagctaaataggacaaattagctagcaagctaactagctaaatttcCATAAATATTTAATGTTGGGAAATATGATGTTAATTTTCAAACATTCATGTATTAAGTTTGCATGCACTTGTAGAGACTGGGTGGATCTTCTTAGCCACTGATGACGTAAATACAGTTGTACCTTTTAACCAAATGAAGGATGTTGTGACATTGCATGTAGAACAACAATGCTATGGCTACATAATAATAAATCCTGTCTCACGGTTGTAGCCTATGATTTACCATCCATTGGATTCACCTATTGTCACTCAGAGACATAGGCCTATTATTAGCCAAGGCAAGACGTTTTGCCAAAACACAGCCTATTTTACAGACTTATGACAATGTTTTGTAGGCTAGATGGTAGCGTAAATACATGGAGGCAAAGTCGTGGTGCAATGTATTTATTCGCAGTGTCGTGACAATTTTAAAATATCAGTGACAAATGGTCATGCGTAAAAGGCAACTCGTTGTAAATGTCCTCAATCCATGACGCTTAAGACTAACCtatacatttttttccccccacacaTTTATATAACGTATGTGGGGCTGTAAAGTGCTCTGGGACGCACGTTTACTTTCGCTGTCGACAGGCTGTATTCAATTCCGCCGATTCAGTTGCAAACCGTTTCTTAAACGGGAGCGAACGTGGAGTGACTTGCcttaatttgtccaatagaaacttgttTAGTTGCAAAACGGAATGCAACTGTTTGAACGATTACACCCCGGGCTTCAGATGGGTTTAGGAGACAGCTGCTACACGTGACGGTTATATGGTTGTATAACGCAACAATATTTAGGTCAACGCGATTCTTGTTTGGCACGTGCACACTTACCACTTACAAAAAGTCTCGTGCAGAGGTCTCGAATAACAACAGGTGAGAGACAAATATGTTCgaaagaggggggaaaaaagacCACTCGAATGAGTTTACTTATATATGGTAATTTGTCAGGTTGGACACGGATATTTACCCGAGAAAGCAGTGTTTTCACTCACAACACGAAACCGTTCAATTATAGGGAGCCTGTGTAGTGTGGTAGCCTATATAGACCATCACTTTTCCCTCAAATACATGCAAAATGACACTTTAGCCTATAATTTTAGAGGATAAAATGAACGTTTCATTCTTAAATCAGGCTGAAATATGAGCCTATTGATAATGGACTCATGCAGAATACTCTTTACAATTGTAATGAAAGGGAAATCTTGGTATTTCATGAATGGTTGTCCTACTTGCTCTGGGCTAGACTATAGCCCACGAAACGATTGCGTGTGAATGCAAGGAACAGTGTCCCCTTCACGGGTGGTTTGAGTGAATGAATGCGAGTGTCGTGGTGACTGGTGATAGAGAAGACAGATTGACCTCTTCCGCGTTTTCCTTGAGTTGTGTTACCCAGGAGGCTACTTTATCCTTGCACGTGTCTACGTTTGTATGTCTACCCCCACCCTGCattagtacagagagagaggaaaaaataaAGTAAATTTATACAACAATCCCCCGCCTCTTCTTACCATCTCTCCTACAGTAGGCTACTTGTACCACATTTAGGCTACACTACCACTTCCTCATGTTCTGCAGCGCCGGGCTGCTGCTGACCGGATCCAACCATGTCCGTAGAGAATTTAGCCGCCGGCGGCAATGACGGGACCACAGACAAACGATCAGGACCCTTGCAGTTAGGAGAAACCAATAGCCTTCCTGTTTCTCGGCCTTACGTCATAACGCCCCACCTGGCAGGAGCCATGCCTGATGTCATAACCCCCCACAAGGCAGGAGCCATGCCTGATGTCATAACCCCCCACCTGGTAGGAGCCATGCCTGATGTGATAACCCCCCACCTGGCAGGAGCCATGCCAATCCAAGAGCTGTCTAGGAAACGGAAGGGGGATCTAGATAACAGGGAAAATGGTGATGCTCAAATAGAGGAGCAACAGAGCAGATCGGAAGACGATGATCAACAGGTGAAAATAAAGTGGTTCAGGGAGCCACACAGCCAAATTGAAAAGCGGCGAAGGGACAAAATGAACACCCTTATTGACGAGCTGTCAGCCATGATCCCCTCTTGGAACCCCATGGCCAAAAAGCTTGACAAACTCACGGTCCTGCGAATGGCTGTGCAGCACCTCAAAGCCCTGAAAGCAGGTGCCAGCAGTTCCTTTACTGATGTTAACTACAAATGCAAGCCTTCATTTCTGCCTCAGGATGATCTCAAGCACCTGGTGCTCACGGCTACAGATGGGTTCCTGTTCGTTGTGAGTTGTGACAGGGGGAAGATCCTCTTTACCTCAGAATCCGTCTTGAAGTTCCTCAACTACAGTCGGTTGGAACTAATTGGACAGAGTCTTTTTGATTATGTCCACCCGAAGGACATTAGTAAAGTGAAAGAGCAGCTGTCAGCCTCAGGATTATACCCTCGCGAACGGCTCATAGATGCCAAAACAGGGTTACAGGTGCAGGACCTTCCTGTGGGAGCAGTTCAACTGTGTACAGGGGCACGGCGCTCCTTCTTCTGCCGCATGAAGCACAGCAGAACAGTTATGAAGACAGAAGACAAAACCATCCAGCCCAGCAGCTCCAAGAAAAAGGAGTCTCAACGATACTGCACTGTCCATTGCACTGGTTACATGCGGAGTTGGCCCTCCACCCAGCTGGGTGCTGAGAGCGACGATAACGagtcctcccatctgtcctgCCTGGTTGCTGTGTGCCGCGTTCACCCTAACAATGCCTGTCAGCCCTCACGAGAGGTCAAGGTCAAACCCACCCAGTTTGTCACTCGCTTTGCAATTGACGGCAAGTTCATCTTCGTGGACCAACAAGCCACTACTGTTCTGGGCTACTTGCCACAGGAACTACTGGGGACGTCTTGTTATGAGTATTTCCACCAGGACGACCTGCAACACCTCGCAGAGACACATAGGAAAGTTCTCCGCAGTAAAGAGAAGATTGAGACCAGCTGCTACAAGTTTAAAACAAAACTTGGCTTCTTCGTCTTGCTTCAAAGTCAGTGGTTTAGTTTTATAAACCCTTGGACCAAAGAAGTGGAGTTTATTGTGTCAACAAACCAAGTTTTGGGACCTGGTCACACAGAAACTGAACAGCCGAGCAGTTCCGAGCTGTTGGACGAAGAGAGAAAACGTACTATCCTTATCCCTGGCATCTGCAGTGGCATGGCCACTATGATCTACGCTGGCAGCATAGGGACCCAGATAGCAAATGAGCTCTTGGACTCCAACAGGGTCAATTGTTCTCCATCGAGTGGAACCTCCAGTCCCTTCTGTCCATCTCAGGACAGGTCTCCAATGGTCTCCTCTCATGCCAACATGCCAAATGAGGAGGTGACTGACTCCGATACAGTGAGCAAGTCTGGATCAGAGTCTGCTTCAAAGGGGGCCACATACGCTGGCAGCAACACACATATGGACACAGCCCGTTCCCCCCCAGCAGAGAGCTCCCAGATGGACCTGGACAGCATGGTGGGACCAGGCCTCGGTATCCTGAGCAACGACGAGGCTGCCATGGCCGTCATCATGAGCCTGCTGGAGACTGATGCCAACCTGGGGGACGCAGTAGACTTTGACAACATGCACTGGTCTCACTAGCAGAGATTCAAATGCCATGAATTCAGGAGAAGAATTTAGATTCCAATTCAAGATTTGAAAAATGCTATTTATTCTTATCTACATTACTTCATTTATTTAAGCATTTTCAAAGAGGATTTCTACCAATTCCTGAATTGGGATTTCAATTCACTTccagaattgaaatggaattgacccccaaCTCCATCAGTCCTTAACTCTGTAGTTTATGGTTAGACAAACTCCATCCAGGGACTATTTTCATGTGCTCCGCTACCAATGAAACAGATGTATGTGCTTCTGAGGAACTTCTACAGCTCTCTGTTTAAGTTTCAGCAAGAGAAATCCAGCCTGAGCTAAAATCAGCAAACTCTTTGGTGGCTTGCACAGCTGGTTCAATTGGTGGGGATTTTTTTGATCAATGTttcaatgtaacaatgtgtactAAAACCACCCGAGTTTGTCTATATCTGAGGGGTCACAGATCGATACCAGTTCGGTACTCTTGGGGTTCCCGCAGGTGTGAAAGTGATCAACCCAAATTCCAAGGGAGTGGACAAAGGCATAGGTTAATCAATTACAAAGTATATTAACTTTGAACACTGATCACTTGTGGAATAACTTAAAATGAAACATTACAACTGTGTCTTCACTCAAATTGTCATTCTCTGTTATTACAAAGTGAAATTGTATATTGTTCTTTTTGCTCTTGCGTTGTAGGCTTCTGTGTAGATGAATCAATATTGCTGCCATGTCTATTGCATAGACAAAGAGGCATACCTTTTTCTGAAGTCACTCAGAAGTAGAGCTACTTCtcttgaaatgttttatttacacTGAAACAGAACACCCTGAAGATGCACCTGCAGGGATGTGATGGAGGCTAAACGCACAGAAACACTTTTGTATTTTGTGAAAAGCATTTACACATTTATTATGCAACGTTGGCGTTCTTAGCAATAGCGTGTGCGTTGCCTATCCTAGAGCAACACAATGGAAATAAGCTCTCAGGCTTTATTATGTTTTGTCCTCAATGGTTTTAAGTATCTGGTCTTCAACTTTTTAATGATCAAATAAAATACTCACTGCCTGTCACCACAACCAGCGTTCAGCTCTTACTCACTATAATTCTTTACCACTACATCCCTGTTCATCTGATCTTATACAAACACATCCTAGTTTGTTTGAAATGTGGAGGTGTGAAACAATCCAGTCAAGGAAAACAATGCTTGCAAACAACCTTTTGAACCTCGCTTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1499935 lncRNA downstream 49154 61005663 ~ 61094637 (-) False G1314798
TU1499937 lncRNA downstream 53352 61087935 ~ 61090439 (-) True G1314799
TU1499936 lncRNA downstream 108975 61005663 ~ 61034816 (-) True G1314798
TU1499934 lncRNA downstream 134459 61005663 ~ 61009332 (-) False G1314798
TU1499927 lncRNA downstream 149471 60989032 ~ 60994320 (-) True G1314792
TU1500005 lncRNA upstream 11761 61188808 ~ 61194701 (-) True LOC110490506
TU1500046 lncRNA upstream 49516 61226563 ~ 61290216 (-) True G1314876
TU1500158 lncRNA upstream 229834 61406881 ~ 61407401 (-) False G1314961
TU1500153 lncRNA upstream 229899 61406946 ~ 61407401 (-) False G1314961
TU1500163 lncRNA upstream 230529 61407576 ~ 61407809 (-) True G1314961
XM_036944886.1 mRNA downstream 11261 61124665 ~ 61132530 (-) True LOC110490500
XM_036944887.1 mRNA downstream 11357 61124665 ~ 61132434 (-) False LOC110490500
XM_021563916.2 mRNA downstream 26687 61107113 ~ 61117104 (-) False LOC110490499
XM_021563925.2 mRNA upstream 2161 61179208 ~ 61187540 (-) True LOC110490503
XM_021563928.2 mRNA upstream 11323 61188370 ~ 61194416 (-) False LOC110490506
XM_021563924.2 mRNA upstream 22138 61199185 ~ 61209954 (-) True LOC110490502
XM_036944890.1 mRNA upstream 40111 61217158 ~ 61231736 (-) False LOC110490507
XM_036944888.1 mRNA upstream 40111 61217158 ~ 61248945 (-) False LOC110490507
TU1499377 other downstream 371303 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 1719484 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 2452409 58689604 ~ 58691382 (-) False G1312023
TU1496820 other downstream 2452777 58689604 ~ 58691014 (-) True G1312023
TU1496827 other downstream 2453434 58634282 ~ 58690357 (-) False G1312023
TU1500688 other upstream 433373 61610420 ~ 61612116 (-) True G1315398
TU1500823 other upstream 657579 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 658331 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 687983 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 687983 61865030 ~ 61891421 (-) False G1315519

Expression Profile