RNA id: XM_021563928.2


Basic Information

Item Value
RNA id XM_021563928.2
length 1321
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110490506
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61188370 ~ 61194701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatgttgtgtgtgtgtatatatatatatataacagttgTGTACTCCAACCTGCGGATGGCAACAACCCGCTAAGAAACGTCTTGTCTGTCCGGAAAtccaaggagaaggagaaggagaaacaACAAAGATGGCGGACAGGCTAACGCAACTTCAAGATGCAGTCAATTCTCTTGCTGATCAGTTTTGTAACGCAATCGGGGTGCTGCAGCAGTGTGCGCCGCCAGCTTCGTTCAGCAACATACAGACAGCAATCAACAAGGACCAGCCATCGAACCCCACTGAGGAGTATGCCCAACTATTTGCTGCACTGATTGCCCGGACAGCTAAGGATGTGGACGTGCTGATTGACTCACTGCCTAGTGAGGAGTCCACGTCAGCTCTACAGGCGGCCAGTCTGCGGCAGTTGGAGGAGGAGAATCATGATGCAGCGGCACGTCTCGAAGAGGTGGTATACCGAGGGGACTTGCTACTGGAGAAGATCCAAAGCGCCCTGGCTGATATTGCTCAGTCACAACTTCGTACTCGCAGTGGAGGGCCCAACCAGACCACACCGCCTGAATCATGACCCCACACAACATGGAGCAAAGACATTCTCACATCACATCACTTTCTCACATAAACACACCAGAGGGTGCAAATGTGTGCAGGAAATCAAATAAAGAGCCCACCTGAACAGCTGACCTCTCAAGGAGGTGAATCTGTGGAAAATACTTTTCGCAATATGTGATGGGACATTGGGAAGTTGGTGCTTGGGGAATTCAGTGAGGCCATGAACCCACATGTTCCTTTACACAAGGACCTTGAGTTCTGCCAGAAAGGAACTGTTTACTCTGTCCTTTTCTTAGCACACTATTTTGGATTAAACAGCACTGCTCTGACGTCAACATCTGCTGTCATTTTCTTAACCCTGGTTATTTTGAGGATGCTAGTTAAGGGTCTGCTGACTGCTGTTGGTAGACATTTTTGTACATACTGAAAGAAACTGGTAAAAATAACAACTATCCTAAATTGATAGAAGCCCATTTTACATGCTGCATGCCAGAAAATAATAACGCTTTACAAGCAAGCCCTGTTGTGTTTTAGAAAGtcatgttttgtattttgtaccAATGTTTTTATTAACTGTTTATTTCAAGGCATGAATGGCATTTTAAAATGAAGTCAAGTGTTTGCATTTTATATGGAATGTTAGTGCTGCACATTTTGATATGCAACACAGACAAACCTTGGCCCCACAGAAAGATGGCTTTCAGAATGCCCCTGTTTTATTAAccagttatgcattagggggcgctattaaaatttttggatgaaaaacgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1499935 lncRNA downstream 93733 61005663 ~ 61094637 (-) False G1314798
TU1499937 lncRNA downstream 97931 61087935 ~ 61090439 (-) True G1314799
TU1499936 lncRNA downstream 153554 61005663 ~ 61034816 (-) True G1314798
TU1499934 lncRNA downstream 179038 61005663 ~ 61009332 (-) False G1314798
TU1499927 lncRNA downstream 194050 60989032 ~ 60994320 (-) True G1314792
TU1500046 lncRNA upstream 32147 61226563 ~ 61290216 (-) True G1314876
TU1500158 lncRNA upstream 212465 61406881 ~ 61407401 (-) False G1314961
TU1500153 lncRNA upstream 212530 61406946 ~ 61407401 (-) False G1314961
TU1500163 lncRNA upstream 213160 61407576 ~ 61407809 (-) True G1314961
TU1500170 lncRNA upstream 227395 61421811 ~ 61422016 (-) True G1314967
XM_021563925.2 mRNA downstream 830 61179208 ~ 61187540 (-) True LOC110490503
XM_021563921.2 mRNA downstream 11323 61143787 ~ 61177047 (-) False LOC110490501
XM_021563924.2 mRNA upstream 4769 61199185 ~ 61209954 (-) True LOC110490502
XM_036944890.1 mRNA upstream 22742 61217158 ~ 61231736 (-) False LOC110490507
XM_036944888.1 mRNA upstream 22742 61217158 ~ 61248945 (-) False LOC110490507
XM_036944889.1 mRNA upstream 22742 61217158 ~ 61248945 (-) True LOC110490507
XM_036944893.1 mRNA upstream 120518 61314934 ~ 61325132 (-) False LOC110490511
TU1499377 other downstream 415882 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 1764063 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 2496988 58689604 ~ 58691382 (-) False G1312023
TU1496820 other downstream 2497356 58689604 ~ 58691014 (-) True G1312023
TU1496827 other downstream 2498013 58634282 ~ 58690357 (-) False G1312023
TU1500688 other upstream 416004 61610420 ~ 61612116 (-) True G1315398
TU1500823 other upstream 640210 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 640962 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 670614 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 670614 61865030 ~ 61891421 (-) False G1315519

Expression Profile