RNA id: XM_021563924.2


Basic Information

Item Value
RNA id XM_021563924.2
length 4024
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110490502
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61199185 ~ 61209954 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGCTCTGGAACGCCCGCCAGGACTAGGGACTGGGACCTGCCCATTTTGTTTTGACGCCTCCTGGGGAAAGGAAGTGGCTTGCAGCAGTTGACATTTGTAGTACGTTTGAGCGACCGGACGTGGTTGGAGTTGTTCCGCGGAAGCAACAACAGCAATGAAAACGAATTTGTAGCCACGCTATGTTGCACTGGCCTGTCGCAGGAAAGCCTTTATTGAATATCTCACCAAATGTATTGCAAGTGAATGTAGCAGACTAGGAAGTAGGATCGTGGGCCTGAAGAAAATGCCGTCCTCCTGGCTAATGTACATATTTGTATATGTCTTGGTCTGTGATGGAGTTGTAGCACAACTGGAAAATCGGGTGGTTTTCCTGTTCAACACCTTTCAGAACGTGAATGTGAATGAGAATGAGACAGTGCAGGCTGTGGTCTCCAGAATCCCCCTTGACGTGGCCTTTATCACCCTCCAGTTCCACACACAGCACAGCAATGCTACGCTGTCCTACACCAGGATGCCAGGGCTGGGCCTCTCTCTAACAGCAGTGGACTCGGGCCTTCTCTCACCCCTGATCCCCGGTCAGACCAAGCTTTCCTGGTTTCTGCTGGCCCCTGATGGCGACTCTGTGGCCGGCACTGGGGTCATCCTCCCCTACACCAGCTCTGacccAGTCCCTGGAGCTTGTAATCTGGAGTTTGACCTGGACATTGACCCAAATGTCTATCTCCACTACAACCTTTTTGAGACTACTATCCGCTTTGCACCTGCAAATATTGGATATTCAAGGGGCTCCAATCCACCTGCCTGTGACACTGAAGTGGGTGAAAACACTCGCTGGCGCCTGAGGTACGACATCTACCAGTACTTCCTGCCTGAGAGCGACCTATCAGAGCAGAGCCTCATCACCAGCATCCAGAGTGTGGCCAATGTGCAGACCATGAGAGAGCATGGGAAAAGGCTCATGACACTATCATCCAGTGATAAGACAGAGGTAGTGTTTAGCTCCATCCCGGGCCAGGGTGTCATCTACTCAGTCATAGTCAGAGACCCAGTGCTTAACACCTCTTCCTCGTATATCCCTGTCCACACCTACGCCTGCAGCTTCTCCTCCACCTTGGATGGCTGTGACACTCTGGGGAAGATATCCACAAGGATCTTCTTCACCATCGCTGGTTTAGCTGGCCTCTTCGTGTGCTTCTTTGGGCACCGCTTCTTCAAATGTGAGCTCTTCTGTATGGGCTTTGTCTTTGCagtgtttcttttttttgtcctGATCACAAGAACTACAAAACTGGACTATGACATCCGCCTGACCCTGACAGCAGTGATTGGCGTAGTGGGGGGAGTTATCCTGGTGATGAGCTGGTGGCGCTTCGGCTCAGTTATGTCCTGTGTCATCGTCGTCGGTCTCGTGCTGGGGTTCCTCATCTCCTCCATTGTCTTCTTCACGCCTGTCGGTGACATACAGGTGTTCCGTTCGAATGTGGTGTTCTGGGTGACGTTCAGCTGCATCGTGGTGGTGGTACCGCTCTTCTTTGTCCGCTGGCCAAGAGAGGGTAACATCACTACGTGTGGTGTAGCTGGAGCCTATGCTGTGGTGCTGGCTGTGAATGCTTACATCTATACCAGCCTATCCTACATCACCCTTAACATTCTCAAACGCTTCCTCAACGACAACTTCAGCAAGGCCTTTACTGATGTGCCTTTCCAGGACATTGATTTCATCATGATCACAGTGTGGGTGGTTCTGGGTGTGTCTGGTATCGTGCTACAGCTCTACCGGGAACGCACACGGCCCTTCTTCCCCCCCAGCCCTTACCTCATGTGGCTGCAAGAGCGGGAGCGCCGCAAGACCAACGTTCTGGACCCAAGCCACCACACGTCCTCACTCCCTTCCCGTCTCCTCGCCCGTGCCCGACAGCTGACTGGCAGGAGAGAGTCCGCTGGCGAGCGCACACCCCTCCTCCTTTAAACCCAACCACTCAACTTAGACCCATTTTACCTAGCCAGGTAGACAGATTCACCCCACTAGGAGGGTGCTATGGGGCATGGGCTCTCTATCTACGGGGACGCACCATTGCATTTGGAGTCTTTCTATTCCAGATTATGGATGTTTTGATTCCATTGATGATGGTAACAGTCCATTAAGGTATTATTTATATATGCTCGGGAGGAACTTTGCCATAAAGTGCACACAGAGAATTTTCAAAGCATTATTTTTGAGAATGAATTGTTTCACTTCCTCAGTCTTGTGGTATTTGGCTGCATTTTCTTAGAGGGTACTGAGGAAGCTGTTACCGCTGCCACATAATATTGTGCCAAAATAGTTGGGCACCCTCTCTCCTAGTATATcacagtgcctttaaacaactaGGGTTACAGCATACCAGTATGGGCAACATATGTGTTTTAATACCACTGAATAGCACAAGAAAACATTTGGAACCTTAAGATGGAGATGCATCATGCAGCCAGTCATTTTGAGGTGGCTTTGACCGCCACATTTGGTAGGTAGGTATTCATTTTGTGTAAAAGTAAGTATACTTTGTTTATCTTAATACCACTCAATGAAGTTTTAATGGGTATGACACCACTGTCGGAGTTCTGGGTATGCCCATTTAGGCTCCAATGGATGTAaattgtttttaatgttttgtcaaCATTTTCAAAGGCAAACGGTCACTTTTACACCATGTTTTGTAAAACTGTATTTAGAGGCCACTTTTTTTATTTGCTTTCTACAAATATGAACAATTACATTTTTAAGAAATATGAGAGCTGTTATATTGAAATGTGTTTTGGGGACCCTTTTTGTGAAACATAGTTGTTGAGTCAAACACTATTAGTGGTATGGGTGTGAACTTGCAGCCTAAAATGTATCCTCTCTTGATTTCATGGACATGTTTGATAGCACTCTAAAATCATAAACCACAAGTGGTAGGTTTAGGTGGATCCTGAGCACTGATGTTTATAGGAAATGGTGATATAGCCAAGCCCTTCAGTATTTCCTGAAGTGTTAAGCAGTAGCAGGAAGAGCAAACGACAAGTGCCACAGCCTCTATTTCTCTGTCAGGTGGCCTAACGCATCATTAAAGTGGGCCTGCTGTTTATGTTCTCTCTTGCCAGCTTTCGTTTGGTAAAGCATTTCCTGTGTTTCCCCTATTACTTTTTTTAGCAGTGGTGCAAGGGTAGCTGGGTGGGTGCATAGCTAGTATTGTAAGCACAATGTCCTGCCAGCTGTTCCCATAGACATCCAATCATTTGAGCCAATGACTATCCCTTTAAAAGCATGCCTCTGCAATTTATTGCAGCGGTGGGCCACCGCTAATTGaacctaggggaaacactgatttTAAGGGAGTCCAATATGTCTTCTGGAACTTTTCTTTaggttctttctctctcattacccACACAGTATGTGCTTTGGTATGAAAAGCTGGCTTGAGGCATTAATGATGTGTACAGGAGTTTGCCTGCAGAGTCACATGACATGGTTTATTAATGCATTACATGAACAATGTCAGTTTTTCCTCCAAATGTAATATTGAAGCTTGATTAAGTGGATAATTTAAGAGATTATTTTTCCTCTTGTGCAAAACAAGGTATCCTCAGAGCAGTGTAATATCCCACCAGGGATTTTGTAAATCCTCGCCATTTGCACACGACAGGATGTTGAATTAAAATGTATTGATCTTTTATGATTATCACCTGACAGGATTAGGATTAGTGTCAAGGATGAAAGATTGAAATGCAAGTAGAAATGGCCATTTCTACTTTTCTCAGTTTCCAAACCAAAACACACGGGTGAGGCTGACATTGTAAAgttatagccatactgttgaaaTGCCTCACTAGGAAATGCTTCTATGCACTAACATTACTGATGAAGCTTTCTTAAAGGTTAAGGTTGCCTTTCAGTATTTTTCACTACAGCTCTTAGGTACTTACCTTGTCATGTTTTAAAATGGactgtttgtctgtgtttgttttgttgtgtgaTAAATTGTTTTTCCTAAAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500005 lncRNA downstream 4484 61188808 ~ 61194701 (-) True LOC110490506
TU1499935 lncRNA downstream 104548 61005663 ~ 61094637 (-) False G1314798
TU1499937 lncRNA downstream 108746 61087935 ~ 61090439 (-) True G1314799
TU1499936 lncRNA downstream 164369 61005663 ~ 61034816 (-) True G1314798
TU1499934 lncRNA downstream 189853 61005663 ~ 61009332 (-) False G1314798
TU1500046 lncRNA upstream 16609 61226563 ~ 61290216 (-) True G1314876
TU1500158 lncRNA upstream 196927 61406881 ~ 61407401 (-) False G1314961
TU1500153 lncRNA upstream 196992 61406946 ~ 61407401 (-) False G1314961
TU1500163 lncRNA upstream 197622 61407576 ~ 61407809 (-) True G1314961
TU1500170 lncRNA upstream 211857 61421811 ~ 61422016 (-) True G1314967
XM_021563928.2 mRNA downstream 4769 61188370 ~ 61194416 (-) False LOC110490506
XM_021563925.2 mRNA downstream 11645 61179208 ~ 61187540 (-) True LOC110490503
XM_021563919.2 mRNA downstream 22138 61143791 ~ 61177047 (-) False LOC110490501
XM_036944890.1 mRNA upstream 7204 61217158 ~ 61231736 (-) False LOC110490507
XM_036944888.1 mRNA upstream 7204 61217158 ~ 61248945 (-) False LOC110490507
XM_036944889.1 mRNA upstream 7204 61217158 ~ 61248945 (-) True LOC110490507
XM_036944893.1 mRNA upstream 104980 61314934 ~ 61325132 (-) False LOC110490511
XM_021563934.2 mRNA upstream 104980 61314934 ~ 61326504 (-) True LOC110490511
TU1499377 other downstream 426697 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 1774878 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 2507803 58689604 ~ 58691382 (-) False G1312023
TU1496820 other downstream 2508171 58689604 ~ 58691014 (-) True G1312023
TU1496827 other downstream 2508828 58634282 ~ 58690357 (-) False G1312023
TU1500688 other upstream 400466 61610420 ~ 61612116 (-) True G1315398
TU1500823 other upstream 624672 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 625424 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 655076 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 655076 61865030 ~ 61891421 (-) False G1315519

Expression Profile