RNA id: XM_036944898.1


Basic Information

Item Value
RNA id XM_036944898.1
length 4633
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC110490512
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61358996 ~ 61389047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGCCCTATAGTGTAAGGCTGAGATAAAGCACGCCAACCTACCGAGTACAACTGCTCTGCTTTGGACCGTGACCCCTTCCCCAGCCCCGCACCACTATAGCCGTAACCATGGACCGCATGGAGCTGAAGAAAGTCTGCACGGAGGCAGACGATGACAGCGCAGACAGTTTGGACGACCGCTTCACAGAGCCCATCGACTCAGAGAAGGCCACCATCAACAGCACCCAGGACATACCTCCTTTGGTATGTCGGTCTTCAACCTGAGTAATGCGATCATGGGCAGCGGCATCCTGGGTCTCTCCTACGCCATGGCCAACACTGGCATTGTGCTttttgtAGTCCTTCTCTTGGGTGTGGCCATCTTGTCGTTGTACTCCGTTCACTTGCTGCTAATGACTGCAAAAGAAGGAGGCTCTCTCATCTATGAAAAGTTGGGAGAGCGAGCTTTTGGCTGGCCGGGGAAAATGGCTGCGTTTGGATCGATAACCCTTCAAAACATTGGTGCCATGTCCAGCTACCTCTTCATTGTAAAGTATGAGCTGCCAGAAGTGATCCGTGCCTTCATGGGACTGGAGCAGAGCTCTGGTGAATGGTACATGAACGGAAACTACCTGGTTGTGTTTGTGTCCATCGGTATCATCCTGCCTCTCTGCATACTCAAAAACCTGGGCTACCTTGGCTACACCAGTGGATTCTCCCTATCCTGCATGGTGTTTTTCCTGGGAGTGCTGATCTATAAGAAGTACAACCTCCCCTGCCCGATGCCCTTCATGTACCATCATACCAACCACAGTATGAATGGAACAGCCCTGGATCCCCACGCCCTGCACAACGGCACCGTCCTCATTGACTTCTCCAGAGCTGACATGTCCCCCGCCTCCTACCTGGACGGCCACCACACCTCAGGGGTCCGCTTCGAACCACACCCCGACGACGTGGAGGAGATGTGCACGCCCAAGTACTTTGTGTTCAACTCTCAGACAGCTTACACTGTTCCCATCCTAGCCTTCTCCTTTGTGTGCCACCCTGAAATTCTACCCATCTACAGTGAACTCAAAGATCGCTCCCGGAGAAAGATGCAGAACGTGTCCAACCTGTCCATCCTGGCCATGCTGGTCATGTACATGTTCTCAGCGCTGTTCGGCTACCTCACTTTCTACGGAAACGTGGAGGCGGAGTTGCTCCACACCTTCACCAAGGTGTATAAGTTTGACACCATGCTCCTGCTGGTCCGTCTGGCTGTCCTGACCGCTGTCACCCTGACTGTCCCCATTGTCCTGTTCCCTATCCGTTCCTCAATCAATACGATGCTGTTCAGCCAACGGGAGTTCAGCTGGGTGCGTCACATGCTCATCGCCGCCTTCATCCTCCTGTTCAACAACCTGCTGGTCATCTTCGTCCCCACCATCAGAGACATCTTCGGCTTCATCGGCTCCTCTGCAGCCACCATGCTCATCTTCATCCTCCCTGCTGCCTTCTATCTACGCCTGGTCAAGTCTGTGCCGATGCGCTCCATGCAGAAGATCTCGGCGGCCATTTTCCTGGTGGTGGGCATCATCTTCATGTTTAGCAGCCTGTCGCTCATCGTGATGGACTGGATCCACAACCCTCCCGGCTCCGGCAGTGGTCACTAAGACGACCCCCcttacctccacctccaccccctctcacCTCAAACCCCCTCCCCTGACTGTGCCTTGGGGGTAAGGTCACCGGGCCCGGGGGGTGCCCCCACACATCACCCACAGACTGAGTACATCAGCGTACTGTAAAGGGGCGGTTCGCTTTTCTCAACCCCCACCCCTTTCCACAAAGTATTACTGGAGGGGACTACGTTCTACGACTGAAACAGATTCTTTTAAGTTCGTTATTCTTTttctttcttgttgttgttggatGGTTTAGTTCTGTAGAATCCTCCACAACAGGGGCTCGCCGAAAGGACACAAAGTAATCAAGGAGGACGGTCAGAAACGGGAGAAAAGACGTCAGACGCTGCGGCTGTTGCTGCGCGCCCTGCCGCAGTTGTCTAGATTGCCCATCATCCCTACTCTGTGATATTACCTGAGCAAAGGAAAAATACGAGCAGGGACCTCAACCATTAAACTGTCAAGAGAACCCAAAGAGAACGAGACCTGATCTAAGAGCTGCCACTATTGGAGCTGGTTGTGACTGCAGGTGTGGCTTCAGCGCCATGGGCTCTGCACACTTGAagattagagagagaggtgggacaaGGGTTCAAAAACAAAGAGCACTTTTAGCAtatgtttcaagttttaatgtatttttaacaCATCcagacacacaaaaaacacacacacatacagcacgCCATCTACACTAATTGGAGCTATTTTGCTTActgtcaaaatgtatttttgtacaCCTAGGGGGAGTAAGAAAAGTCGATGACAGGTGTAGTATCTTTTTCCGAGTTAGAGCCTGGAAAAAGTTCTTCTGAGGGATATTTGTAAATTAGGTTTGGTAAAGTAGTTTATATCGTATTTTATACTTTTACAATCAATCAAATCACCACAGTTTATGTGCACACACAAATTTCTCAGTGGCTAGTGTGTTGCTCTCAAACATCCCTTGACAGCAATCATGAGATCAGACGTTAGCAATcatacacattgacagacacaTACACTAAGTCAACATTTTCAGCCATGTCCATTCTCCCAATCAACACTTAACGCGATGATCAACACACACTGTCAGCCATTCTGAAACAGCCGTGTAGACTGAGCTTCAAACAAGAGACTCCATTCAGTGTTATTGTCGCAGAGATTTGAATGTTGCCGAGTTTTGAATGTACCGGTACTTGGCCAAACGTCTACTGAATGACAGTTTACGTGTTTCTTTCTTTGCCTTCTTGTCCAATGTGTCACACTACAGAGCCCTTGGGTCAATTGCAGCGAACAATACCAGGAGATGAGCTCATGTTGATGGCTTGAGATCATTTTCAACTTGTAACTCCATCTCTTCCTAAACTTCATGTGAAGTGAACTGTGCTATGAAATACAACTAGTGAACGCTAGTTTCAGTGAAGAGGAACAACAACAGAACTCTATGAGAGTTAAAGAAGGTCTACTGGCAGTATACCATACAGGTGATTTAGCTATTTGACTTGGCACAGCGATCCTATAACCCATGAGAATGTTTTTCTTTTATCCCAGTGTGTAAAACGATATCTTGTGACAAAATTCAATTGTGGGAAAAAATATTGTGGGTAAAATAAGAAATGGATTGAACCTCCAGACTGTGCTGTTTCTGAGATACAAGATACATTGTTTTATCTGTGTTTGCAGTTCACatcttaaaggggaaatctgcagttgctacatcttGAAAAATATAACTTAGAGCTTAGTTTAACCgtcgtaccccatcagatccCAAAATATATGATTagtttactccaatgtttgtaaacaacgtaaatgtaaacaatatatagcctcaaaacatggttaaaaccatcattttgatatcatggatggtcagtccttgcatccgtaTACCTCAACCTTCAGCTTTTTCCGGAACAGCCGGGGACTACACGTTGTTATTgcttcaactgctgattgcccctttaagttcAACATGGGTCATAATGTCAAATGTGGAAAAGATTAGAGAAATGAAATGCATCTACTGTTACTTAGCAGGCTTATCATTTGGTGATGTTTATACCAGCGATTTGTTTATGCCAGATTGCTGCTGATAGTAGAGTTAACATAAACAGTATGTGTTTATTACTGTAATTGTGACTATTGTTACTGTAATTTACATCATTTCAACAGACCTCTTAAAATGCCCTAATTAATTAACTAACACCACGATAAAGGAATTTCAAAATGTTGTGCAAATTGTGCCGTGCTGAAAAAACATTAGCAGTTTGCATTCGAAGCATAGAATACCTGTTTTCTAAGGTGTTAAAGCAGATACGTGTTCTGAATGGATCCAGCCAGAATGGACAACATTTACAGATCCTTTGTGGATCTACATATGCATGAAACAAATTGACATTTCAAATGAAATGCTGTTATGTGTATGTTTTGGATTACAAACATGGTCTTTTCTGACAACTTGTATATGCTTTGTAAATAATCGTATTATATGGTACTCACTGAAttatgtgtgtggggggttgtAAGGGATTTTACCAGAAGTCTTCTACAATGTTATTTCAGTATTCAATGTTTTTGATTTTGCTCTATGATGATATTTCTTTCTTTTATGGAAGCTTGTACATTTGTAGAAAATCTCTATCCCTTTTCATTTCTTTATAGTTACATATCTGGAGGACCTAGACCTTGAATTAATGAATGGTTTTGTCGGTAATGTTGTCTGATTCCTCAGTCCTACAGGGGCTGCAGGGTGCAAGTAGAATGTCAGTGTTGATGTCTTGCGAGACTTAGGTAGATATTGCCTATGTTGAGCTGAAGTATTTGATTCATGCCATGCGGGTGGGTGTGCTGTCAAAAGATCAATGACGTTCAGATCACATGCTTTTAGTAAGAACCACCCTACAGCCACATTTGAGATGCGGTCCGCATCGATAGGGGCTGCTGGGTCTTTGCTGAAATTCCTCCTGAGCCTCAGTTACTGTATGTGAAGATAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500046 lncRNA downstream 68780 61226563 ~ 61290216 (-) True G1314876
TU1500005 lncRNA downstream 164295 61188808 ~ 61194701 (-) True LOC110490506
TU1499935 lncRNA downstream 264359 61005663 ~ 61094637 (-) False G1314798
TU1500158 lncRNA upstream 31372 61406881 ~ 61407401 (-) False G1314961
TU1500153 lncRNA upstream 31437 61406946 ~ 61407401 (-) False G1314961
TU1500163 lncRNA upstream 32067 61407576 ~ 61407809 (-) True G1314961
TU1500170 lncRNA upstream 46302 61421811 ~ 61422016 (-) True G1314967
TU1500173 lncRNA upstream 49584 61425093 ~ 61426132 (-) True G1314969
XM_021563934.2 mRNA downstream 32492 61314934 ~ 61326504 (-) True LOC110490511
XM_036944893.1 mRNA downstream 33864 61314934 ~ 61325132 (-) False LOC110490511
XM_036944888.1 mRNA downstream 110051 61217158 ~ 61248945 (-) False LOC110490507
XM_036944889.1 mRNA downstream 110051 61217158 ~ 61248945 (-) True LOC110490507
XM_036944890.1 mRNA downstream 127260 61217158 ~ 61231736 (-) False LOC110490507
XM_021563936.2 mRNA upstream 34399 61409908 ~ 61415090 (-) False LOC110490513
XM_036944899.1 mRNA upstream 34399 61409908 ~ 61415090 (-) True LOC110490513
XM_021563940.2 mRNA upstream 51202 61426711 ~ 61454960 (-) False LOC100653449
XM_021563939.2 mRNA upstream 51202 61426711 ~ 61465983 (-) False LOC100653449
XM_021563938.2 mRNA upstream 51202 61426711 ~ 61465984 (-) False LOC100653449
TU1499377 other downstream 586508 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 1934689 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 2667614 58689604 ~ 58691382 (-) False G1312023
TU1496820 other downstream 2667982 58689604 ~ 58691014 (-) True G1312023
TU1496827 other downstream 2668639 58634282 ~ 58690357 (-) False G1312023
TU1500688 other upstream 234911 61610420 ~ 61612116 (-) True G1315398
TU1500823 other upstream 459117 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 459869 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 489521 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 489521 61865030 ~ 61891421 (-) False G1315519

Expression Profile