RNA id: XM_036944899.1


Basic Information

Item Value
RNA id XM_036944899.1
length 4581
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC110490513
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61409908 ~ 61415090 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAACAAGTCGACTAATTGGTTTAATAGCCTTAGCCTACTATCGATGTGCCATATTTATTTCGTGAGCAACCGCAAGCCCTGCTTTCATTTTGACGCTTTTGGAGTCTGTTTGGAGATGACAATACACTAGAAAGTGTATTTTATTGTATGAAGTATtggttccattttttttttataacggAATATAGCCTAGGCATCTTGTATGAGATGAAAACAGTTCCAGAGAGCGAAATACGTTCATTGGTTTTGGTCACAATACGAAGAAACGATGTCGCATTATTGTGAGGATCTTCATCGTTTGGAAAtctctttttgaATGGGACGCTTAAGAGTGGCTCATAAGATGTTTGCAACTTCTTCACCAACAAGCTGAGACTCAGCCATCAAACAGTAGAATGTGTCCCGTTGTGCCACAACCGCTGGGTGTGTCCATTGACGGGCATTTACATGGCTTTAGGGTTACCTTGGCATTCCTCCTGTCCATGTGTCTGTCCCGTATGACGTTCACGGCCGCCTGCCCACCACCCTGCCTGTGTGCCAGCGACATCGTCTCCTGCAGTGGTCTCAATCTGTCAACCGTTCCCCCTGACCTCCCTGGCTATGTCACCCGATTGGACCTCAGTCACAATGTCCTCACTGCTCTGCTCTTGGATTGGCCAGACCGGTGTCTGGACAGGCTGACCACGCTGGTCCTCAGTCAAAACGCCATTACCCATCTGGCACCGGACACCTTCGCCCCCACCCCTCACCTTCGCCACCTGGACCTCTCGTCCAATGGGCTGTCTCGGCTCAACGCATCTGCCTTCCATGGGCTCGGGGAACTGGAAGTGCTGCTTCTGTTTGGAAACCACATCAGTCAGACCATGGCGGGTGCCTTCCAGGGTCTGAGCAGCCTGGAAAGGCTGTATCTGGGCGGGAACAGACTGACTGCCTTCCCCCTGGAGCTCTACCAGCGAGATGGGGATCTGCCATGTCTGCGTTTCCTGGATTTGTCGATGAACATGGTGAGGCAGGTGCCCGTGCAGAGCCTACTCTCTCTGGCCACCTGGCAGCAGAGTGGCATCTATTTGCAGGGGAACCCGTTGGTGTGCGACTGTGCCCTGCGAGCCATGCTGGAGTACTGGGAGAGGAGGCAGTACCGTCCCCTACTAGACTTCAGGGAGGAGTATCCATGCAGCCTGGGTCAGGAGGAGTGGCTGAATTGTTCTGCTAGCCCTCAGGGTGGGTTCCATGGAACTGTAGAAGTGTCTTACCAGGCAGAGCCTGGTGATTGGCTCATGGTGCCGTGCCCTGGCGTTTCGCTCCCCCTCCGGGAAGGGTTGATGGTGTTCTGGGTGACCCCGGGCGATGGATCCCCGGCACTGGGCGTAACAGACGGTCAGAGCAGCCGCCTCACGGTCCTCACCAACGGTACCCTGGAGATCCGAGGGGCTCTCCGTGAGGATTCAGGGACTTACTCATGCGTGGCAGTCCGCGGTCGACACCGGAGCTCCAACGAGACTTTGGAGGTCACCGTCTCCGTAGGTAACCCCAGCGGACTGGGCAAGAGCGGGGAGGAACGTAGCAGTGGCGGGGAGCATTTTAACACGGCATTTACCACGCTGGCGTCCTGTGTGGTCAGCATCGTCCTGGTGCTCCTCTACCTGTACCTCACTCCCTGCCGTTGCCATGGTGGAAAGGCCGGGGGCGTTGGTGGGTGCGGCGGGCGAGCCATGCTCCTCTGTGCAGACCCCAGAGAGGCGGAGCTCGCAGACAGAAGGGTCACCGGTGGAAAGAGGGTGGCCTTCCTCGAAACGGGGGGCGAGCACCCCCACAAATGCAGGGCCAAGCACCCAGTAATGGACGCTGCAGCCATAGAGGGCATTTTGAAGAATGGAAGCAGGGCCTTGGAGCAGGTCCTCGAAGAACACGTTGCGTAGCATTCAGGGTGTGTCCTTCAAGCCCCACCAGGCTTTCACTGGACTAGACTACACCATGCAAAATGGACTGTTTGTAACATGGTTCTCAAAATGCCAAATATTGAAACCTCGCATTGAGAATCCATACATGAAAGTAGTTTTAACACCTGTTATTTCACAACAGTGATCAGACTGCTTTTTAATGTTATACCTACTGTGTGGATAGATATGGAAACAGTAGTTGGTGTCTTTATGTCAAAGTTTTATACATATGAACTTGCAGATAAAGAAATAGTTCCAAACAAAATACATTCTGTGGAACACCTGTGTGAAATGCTTTATGTAGGCATTCATGGGTCTATAATGTtattacaggatacacatggtatacactgtccatccaaatgcttacttgcaggctcCTAGTCTGTCATAAGGTGCCATGCGCTATTATGAATGATCATAACAGGGTGAACACTGACTGTACGTGTATTCTTAATGTATTATATGCAGGTTGAATGGATGCATTCAGACAAAGATGCCAAAGTCGACCCTGATCAGTGTCTGGGGACTAGCCAGCTCTAGCCCCAAGCCTCCCATGACCTATATACTATTGTTGTTCTCGGTTATTTTTGCAGGTGTGACTGTGAATAGAGTTTTTCAAGGTAAGGAAGGGACTGATATGTTACTGCTGGTATTAATATATTGAAATAACTTGGATATTGACATTCATTTAGAAGACCTACATTTCATTGTCTTGATGTTGTATGTTAATTTAAGTATATATGCATTTCAGATGAGTAGGCTTTTTTATCCATCAATGATCTCGAAACAGTGCAAGAGACCTGCTATATCTTGCAGACACCATTTTTAGAAAGAAAACACTTAATTTTATCTTAGCGTTAGGCTGTAATGGAATAAAGCTTTAAAAAGCGTGTTCACGTCCTTTGAGGTGATGGAGTGGACAGGAATTGATTGCCGAGATCCCCCCCTCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACCCTCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCATCCTCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCTCTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACCCTCACTGACAGTTCTCTAGGGGACATATATAACTACAGTAGGTTCCCACTCCCACCCTCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACCCTCACTGACAGTTCTCTAGGGGACATATATAACTACAGTAGGTTCCCACTCCCACCCTCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACCCTCACTGACAGTTCTCTAGGGGACATATATAACTACAGTAGGTTCCCACTCCCACCCTCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACCCTCACTGACAGTTCTCTAGGGGACATATATAACTACAGTAGGTTCCCACTCCCACCCTCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCACCCCCACTGACAGTTCTCTAGGGGACATATTTAACTACAGTAGGTTCCCACTCCCaatgacagttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500163 lncRNA downstream 2099 61407576 ~ 61407809 (-) True G1314961
TU1500158 lncRNA downstream 2507 61406881 ~ 61407401 (-) False G1314961
TU1500153 lncRNA downstream 2507 61406946 ~ 61407401 (-) False G1314961
TU1500046 lncRNA downstream 119692 61226563 ~ 61290216 (-) True G1314876
TU1500005 lncRNA downstream 215207 61188808 ~ 61194701 (-) True LOC110490506
TU1500170 lncRNA upstream 6721 61421811 ~ 61422016 (-) True G1314967
TU1500173 lncRNA upstream 10003 61425093 ~ 61426132 (-) True G1314969
TU1500180 lncRNA upstream 39487 61454577 ~ 61454946 (-) True LOC100653449
TU1500195 lncRNA upstream 41815 61456905 ~ 61457119 (-) True G1314982
TU1500200 lncRNA upstream 53428 61468518 ~ 61468718 (-) True G1314987
XM_036944895.1 mRNA downstream 20861 61358996 ~ 61389047 (-) True LOC110490512
XM_036944896.1 mRNA downstream 20889 61358996 ~ 61389019 (-) False LOC110490512
XM_036944897.1 mRNA downstream 23129 61358996 ~ 61386779 (-) False LOC110490512
XM_036944894.1 mRNA downstream 30616 61358996 ~ 61379292 (-) False LOC110490512
XM_036944898.1 mRNA downstream 34399 61358996 ~ 61375509 (-) False LOC110490512
XM_021563940.2 mRNA upstream 11621 61426711 ~ 61454960 (-) False LOC100653449
XM_021563939.2 mRNA upstream 11621 61426711 ~ 61465983 (-) False LOC100653449
XM_021563938.2 mRNA upstream 11621 61426711 ~ 61465984 (-) False LOC100653449
XR_002468710.2 mRNA upstream 12621 61427711 ~ 61465987 (-) False LOC100653449
XM_036944900.1 mRNA upstream 60486 61475576 ~ 61477946 (-) True LOC110490514
TU1499377 other downstream 637420 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 1985601 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 2718526 58689604 ~ 58691382 (-) False G1312023
TU1496820 other downstream 2718894 58689604 ~ 58691014 (-) True G1312023
TU1496827 other downstream 2719551 58634282 ~ 58690357 (-) False G1312023
TU1500688 other upstream 195330 61610420 ~ 61612116 (-) True G1315398
TU1500823 other upstream 419536 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 420288 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 449940 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 449940 61865030 ~ 61891421 (-) False G1315519

Expression Profile