RNA id: XM_021563938.2


Basic Information

Item Value
RNA id XM_021563938.2
length 4347
RNA type mRNA
GC content 0.51
exon number 29
gene id LOC100653449
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61426711 ~ 61465987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATAGACCGTATTCTTCCCAAGCTTTCTGGAAGGACGAAGTCAGGGTGGACGATACCAGACTGGCAAACTAAATTATACATAATAACACGTTATATATCCTGAGTAGTTGTAGGctaggttctgtatttatttatagTCATTCAAATATTGCCTACACGTGTGCTCGAGATATGTAGGCTGGCTAACATATCCCAGGCTTTGAATTGAACTTGCTGGTGATGATGCTCGTGGATCATGACTGTTCTGGGACTGATGTTCGGTTGGTTCGTCAGCTCAACAAGGGTATGAGGATTCAACCAGGGATATGCAACGGGGGGACCGAGCAGCAACGGGCATGTAAAACTGGAGACGTCAATGAACATATTGTTTGTCTGCAATCTCAGGATGAAACGGGACGGGTGTGTCCTGGAAGCCCAGCACTGGCAACAGACACGCGGCTATCCTCCTGTTCCACAGCAGACCGTGAACCAAGCAGTGGCAGTTACAACGTCTCCACTGGAACGGGAACCTTTTACAGCTGCGTCAGTCAGATCACCATCGGGTTTGATCTCGGGGGCCAAGTGGCCATTGGTATCTCTCATTGGAACAGCCCATTCCCTCCCAGAGGTCACCCCCTGTGTGACAGTCCTGATGGGGTTCGCTCCGAGGCCTCCGCTGCCGCAGCCCCGCAACTCCCTGAGTACCAagagccagtgtcctgtcctgcCTCCCTGTCAATCAACCCTATATCATCCCACTGCAGCGCCAGCCAGGAGACCATCAGCGATAGCAGCACAAGTGTGAGTATCTCTCTACATGGGGCTGAGCTCCAGTGGCAGAGCCCCCACAGACGCAGAGTTCTGCGGGCCCCGGCCCCTGGGGTTGAGGCTGCGGATTTCTCCTTCCCCCCCAACAGGTCACCAGTCAGAATGGAGGTGTCCTTGGCTGGGGCTCCTGATTCCCCCAGCACACAGGACAACGTGCCACCCCACGTTTTGAAGGATGTGAAGTTGTTAATGGAGAGTTTGGAGGGGCTGAGCACTCCGTCCAAAGATGGCGACTCAACCCTGCTTGACCCCGAGACCAGTAGCATCCTGGACGACAACACCAGGACTGACCCGGCaccagaggTAGGGAGAAGTAGGTCCAGTGGCTTGTGCTTCAGCGATGGCAAGTGCCACATTGACTACATCCTGGTTTACAGGAAGTCTGGTCCACAGTCGGAGAAGAGGGAAATATTTGAGCGCAACATCCGGGCCGAGGGCTTGCAGATGGAGAAGGAGTTGTCTGTGTGCAACAGTGATGTGATCTTCCTGAAGCTGCATGCTCCCTGGGAGGTGCTGTGTCGCTACGCAGAGCTTATGAACATTCGGATGCCGTTCAGGAGGAAAATCTATTACATGCATCGACGGTACAAGTTCATGAGTAGGATGGAGAAGAGAATCAACAGATTTCGAGGATGGCTGCCTCGCAAACCCATGAAGTTTGACAACAACACCCTCCCTGACCTGGAGGAGAACGAGAGCTTTACCGCCCCCTTCAGTCGCTCCAGAATAcatcaTTTCACCATTCACAACAAAGACACGTTCTTCAACAACGCCACCAGGAGTCGCATCGTCCATCATATCTTGCAAAGGGTCAAATATGAGGAGGGCAAAGACAAAATGGGGCTGAATCGTCTTTTGAGCAATAGTTCATACGAAGCAGCTTTTCCCCTTCATGAGGGGAGCTACAGAAGTAAGAACTCCATCCGGACACATGGGGCAGAGAACCACAGACACTTGCTGTATGAATGCTGGGCCTGGTGGGGTGTGTGGTACAAGTACCAGCCACTGGACCTCATAAGGCGATACTTCGGGGAGAAAATTGGTCTCTATTTTGCCTGGCTGGGTTGGTACACTGGGATGCTGTTCCCTGCGGCGCTGGTTGGGCTCATGGTTTTTCTCTACGGCTGGTTCACCCTAGACCACTGCCAGGTCAGTAAAGAAATCTGCCAGGCCACTGACATCATCATGTGCCCCATATGTGACGAGTACTGCCCCTACCTGAGACTCTCAGACAGCTGCATCTATGCCAAGGTCACCCATCTTTTTGACAACGGAGCAACAGTTTTCTTTGCTGTATTCATGGCTGTGTGGGCAACCGTGTTTCTCGAGTTCTGGAAGAGGCGGCGAGCGGTCCTTGCATATGACTGGGACCTAATtgactgggaggaagaggagGAGGAAATCCGTCCCCAGTTTGAGGCCAAATATTCAAAAAAGGAGAGGATGAACCCCATATCTGGAAAGCCTGAGCCGTACCAGGCCTTTACAGACAAGTACAGCCGACTCATCGTCTCAGCTTCTGGAATCTTCTTTATGATCCTGGTGGTGATCGCTGCCGTCTTCGGCATCGTGATTTACCGCGTGATCACAGTCAGCACTTTTGCCGCCTTCGGCTGGGCTCTCATCAGGAATAACTCTCAGGTGGCCACCACCGGCACAGCCGTGTGCATCAACTTCTGCATCATCATGCTCCTCAATGTGttATATGAAAAAGTTGCCCTTCTGCTCACCAATTTAGAGCAGCCGAGGACTGAGTCCGAGTGGGAGAACAGCTTCACCCTGAAGATGTTCCTGTTTCAGTTTGTCAATCTCAACAGCTCTACCTTCTACATAGCTTTTTTTCTGGGCAGGTTCACTGGCCGGCCAGGAGCCTATATCCGCCTCATTAACCGCTGGAAATTGGAAGAGTGCCATCCCAGTGGTTGTTTGATAGATCTCTGCATGCAGATGGGTATCATCATGGTGCTCAAGCAGACCTGGAACAACTTCATGGAGCTGGGCTACCCGCTGATCCAGAACTGGTGGACACGGCGAAGGCTGAGGCAGGAGCACGGCCCCAACGCCAAGGCCAGCTTCCCGCAGTGGGAGAGGGACTACAACCTGCAGCCCATGAATGCCTACGGACTGTTTGACGAATACTTGGAGATGAtctTACAGTTTGGCTTCACCACCATATTTGTGGCAGCTTTCCCCCTGGCCCCGCTCCTGGCCCTCCTCAACAACATCATCGAGATCCGCCTGGACGCCTACAAGTTTGTCACCCAGTGGCGGAGACCCCTGCCCTCTCAAGCCAAAGACATAGGGATCTGGTACGGCATCCTGGAGGGCATCGGTATCTTGTCCGTCATCACCAACGCCTTTGTCATCGCCGTCACCTCCGACTTCATCCCACGCCTTGTCTACGCATACAAGTACGGCCCGTGTGCCGGGCAGGGCCGGGCCGGGGAGAGGTGCATGATGGGATATGTAAACGCCAGTCTATCGATGTTCAGAGTGTCTGATTTTGAGAACACTTCGGTGCCCAGGACAGATGGATCGGATATGTTTGGAGAAGCAGTGAAGTACTGCAGGTACCGTGACTACAGAGAGTCCCCGGACTCGCCCGGTGAACCATACTCCTACACGCTACAGTTCTGGCATGTCCTGGCCGCACGGCTGGCCTTCATCATAGTCTTCGAGCACATGGTTTTCACCATCAAGAACCTGATCGCCTACCTGATCCCAGACCTGCCCAAGGACCTGCGTGACCGCATGCGGAGGGAGAAGTACCTGATCCAGGAGATGATGTACGAGGCCGAGCTAGAGAGACTGCAGAAGGAGAAGAACGAGAAGAAGAAGAATTACAGGGCCCATCATAACGCATTGCCCTGAATGCACAAGCAGGTCATACTGGGGTCCATTTTTGCTCGGTGGTGTTGTGAGTGGGAATGACAGAGAATTGGCTGCATGCACGCCAGGGACTGTCCTGCCTGTCTGCGTCTCCCACTGGACCAGGTGAGCGCCCCCAAGAGGACCGTCAGCATGCTCCTCGCCATGGTGTTCAAACGTACTGTACGTCATTCTGAATCCGAGAGGCCAGTGGGTGAGGGGGAAAAAAGAGGACATACATTGGAACATTTTACAATGGGTTTACTACTTTTTTTCCAGATTGCTCCTTCTACTTTGGACTCACAACTATACATTTCTTCAAAACCTGAATGTAGATTTCAAAGAAACACAAAAACAATCTTTTGCAGTTCTATTGTCACAACTTAAAAAAATATTCTGTCATCCGTGCGGTTGAATGACAAACCCTGTTTACAATCCTAGCCTTTTTATTTTGAGGACAAAACTCATGAGAAATCATGATCAATTGCTTTCACAAGGTTGTGAACCTTCAGCCATGTTCTCTGCTTACATTGTGTGCTGCAATAAGATGTTATTTTGAAACGATGTTCCATCAGATCTGTGTTAGTGGACACAGACTGCTCAAACATCCAATGCCTTCCTTTACAATGGATACTAACAACAAGACTAATAAAAATTCATATTTATTACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500173 lncRNA downstream 579 61425093 ~ 61426132 (-) True G1314969
TU1500170 lncRNA downstream 4695 61421811 ~ 61422016 (-) True G1314967
TU1500163 lncRNA downstream 18902 61407576 ~ 61407809 (-) True G1314961
TU1500158 lncRNA downstream 19310 61406881 ~ 61407401 (-) False G1314961
TU1500200 lncRNA upstream 2534 61468518 ~ 61468718 (-) True G1314987
TU1500185 lncRNA upstream 8940 61474924 ~ 61485677 (-) False G1314981
TU1500187 lncRNA upstream 8940 61474924 ~ 61477861 (-) False G1314981
TU1500189 lncRNA upstream 8940 61474924 ~ 61485677 (-) False G1314981
TU1500190 lncRNA upstream 8940 61474924 ~ 61485677 (-) False G1314981
XM_021563936.2 mRNA downstream 11621 61409908 ~ 61415090 (-) False LOC110490513
XM_036944899.1 mRNA downstream 11621 61409908 ~ 61415090 (-) True LOC110490513
XM_036944895.1 mRNA downstream 37664 61358996 ~ 61389047 (-) True LOC110490512
XM_036944896.1 mRNA downstream 37692 61358996 ~ 61389019 (-) False LOC110490512
XM_036944897.1 mRNA downstream 39932 61358996 ~ 61386779 (-) False LOC110490512
XM_036944900.1 mRNA upstream 9592 61475576 ~ 61477946 (-) True LOC110490514
XM_036944901.1 mRNA upstream 17117 61483101 ~ 61485762 (-) True LOC110490515
XR_002468711.2 mRNA upstream 55768 61521752 ~ 61524082 (-) False LOC110490517
XR_005036156.1 mRNA upstream 73409 61539393 ~ 61557927 (-) True LOC110490518
XM_021563966.2 mRNA upstream 147953 61613937 ~ 61633036 (-) False LOC110490529
TU1499377 other downstream 654223 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 2002404 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 2735329 58689604 ~ 58691382 (-) False G1312023
TU1496820 other downstream 2735697 58689604 ~ 58691014 (-) True G1312023
TU1496827 other downstream 2736354 58634282 ~ 58690357 (-) False G1312023
TU1500688 other upstream 144436 61610420 ~ 61612116 (-) True G1315398
TU1500823 other upstream 368642 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 369394 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 399046 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 399046 61865030 ~ 61891421 (-) False G1315519

Expression Profile