RNA id: XR_002468710.2


Basic Information

Item Value
RNA id XR_002468710.2
length 3762
RNA type mRNA
GC content 0.53
exon number 28
gene id LOC100653449
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61426711 ~ 61465987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCATAGACCGTATTCTTCCCAAGCTTTCTGGAAGGACGAAGTCAGGGTGGACGATACCAGACTGGCAAACTAAATTATACATAATAACACGTTATATATCCTGAGTAGTTGTAGGctaggttctgtatttatttatagTCATTCAAATATTGCCTACACGTGTGCTCGAGATATGTAGGCTGGCTAACATATCCCAGGCTTTGAATTGAACTTGCTGGTGATGATGCTCGTGGATCATGACTGTTCTGGGACTGATGTTCGGTTGGTTCGTCAGCTCAACAAGGGTATGAGGATTCAACCAGGGATATGCAACGGGGGGACCGAGCAGCAACGGGCATGTAAAACTGGAGACGTCAATGAACATATTGTTTGTCTGCAATCTCAGGATGAAACGGGACGGGTGTGTCCTGGAAGCCCAGCACTGGCAACAGACACGCGGCTATCCTCCTGTTCCACAGCAGACCGTGAACCAAGCAGTGGCAGTTACAACGTCTCCACTGGAACGGGAACCTTTTACAGCTGCGTCAGTCAGATCACCATCGGGTTTGATCTCGGGGGCCAAGTGGCCATTGGTATCTCTCATTGGAACAGCCCATTCCCTCCCAGAGGTCACCCCCTGTGTGACAGTCCTGATGGGGTTCGCTCCGAGGCCTCCGCTGCCGCAGCCCCGCAACTCCCTGAGTACCAagagccagtgtcctgtcctgcCTCCCTGTCAATCAACCCTATATCATCCCACTGCAGCGCCAGCCAGGAGACCATCAGCGATAGCAGCACAAGTGTGAGTATCTCTCTACATGGGGCTGAGCTCCAGTGGCAGAGCCCCCACAGACGCAGAGTTCTGCGGGCCCCGGCCCCTGGGGTTGAGGCTGCGGATTTCTCCTTCCCCCCCAACAGGTCACCAGTCAGAATGGAGGTGTCCTTGGCTGGGGCTCCTGATTCCCCCAGCACACAGGACAACGTGCCACCCCACGTTTTGAAGGATGTGAAGTTGTTAATGGAGAGTTTGGAGGGGCTGAGCACTCCGTCCAAAGATGGCGACTCAACCCTGCTTGACCCCGAGACCAGTAGCATCCTGGACGACAACACCAGGACTGACCCGGCaccagaggTAGGGAGAAGTAGGTCCAGTGGCTTGTGCTTCAGCGATGGCAAGTGCCACATTGACTACATCCTGGTTTACAGGAAGTCTGGTCCACAGTCGGAGAAGAGGGAAATATTTGAGCGCAACATCCGGGCCGAGGGCTTGCAGATGGAGAAGGAGTTGTCTGTGTGCAACAGTGATGTGATCTTCCTGAAGCTGCATGCTCCCTGGGAGGTGCTGTGTCGCTACGCAGAGCTTATGAACATTCGGATGCCGTTCAGGAGGAAAATCTATTACATGCATCGACGGTACAAGTTCATGAGTAGGATGGAGAAGAGAATCAACAGATTTCGAGGATGGCTGCCTCGCAAACCCATGAAGTTTGACAACAACACCCTCCCTGACCTGGAGGAGAACGAGAGCTTTACCGCCCCCTTCAGTCGCTCCAGAATAcatcaTTTCACCATTCACAACAAAGACACGTTCTTCAACAACGCCACCAGGAGTCGCATCGTCCATCATATCTTGCAAAGGGTCAAATATGAGGAGGGCAAAGACAAAATGGGGCTGAATCGTCTTTTGAGCAATAGTTCATACGAAGCAGCTTTTCCCCTTCATGAGGGGAGCTACAGAAGTAAGAACTCCATCCGGACACATGGGGCAGAGAACCACAGACACTTGCTGTATGAATGCTGGGCCTGGTGGGGTGTGTGGTACAAGTACCAGCCACTGGACCTCATAAGGCGATACTTCGGGGAGAAAATTGGTCTCTATTTTGCCTGGCTGGGTTGGTACACTGGGATGCTGTTCCCTGCGGCGCTGGTTGGGCTCATGGTTTTTCTCTACGGCTGGTTCACCCTAGACCACTGCCAGGTCAGTAAAGAAATCTGCCAGGCCACTGACATCATCATGTGCCCCATATGTGACGAGTACTGCCCCTACCTGAGACTCTCAGACAGCTGCATCTATGCCAAGGTCACCCATCTTTTTGACAACGGAGCAACAGTTTTCTTTGCTGTATTCATGGCTGTGTGGGCAACCGTGTTTCTCGAGTTCTGGAAGAGGCGGCGAGCGGTCCTTGCATATGACTGGGACCTAATtgactgggaggaagaggagGAGGAAATCCGTCCCCAGTTTGAGGCCAAATATTCAAAAAAGGAGAGGATGAACCCCATATCTGGAAAGCCTGAGCCGTACCAGGCCTTTACAGACAAGTACAGCCGACTCATCGTCTCAGCTTCTGGAATCTTCTTTATGATCCTGGTGGTGATCGCTGCCGTCTTCGGCATCGTGATTTACCGCGTGATCACAGTCAGCACTTTTGCCGCCTTCGGCTGGGCTCTCATCAGGAATAACTCTCAGGTGGCCACCACCGGCACAGCCGTGTGCATCAACTTCTGCATCATCATGCTCCTCAATGTGttATATGAAAAAGTTGCCCTTCTGCTCACCAATTTAGAGCAGCCGAGGACTGAGTCCGAGTGGGAGAACAGCTTCACCCTGAAGATGTTCCTGTTTCAGTTTGTCAATCTCAACAGCTCTACCTTCTACATAGCTTTTTTTCTGGGCAGGTTCACTGGCCGGCCAGGAGCCTATATCCGCCTCATTAACCGCTGGAAATTGGAAGAGTGCCATCCCAGTGGTTGTTTGATAGATCTCTGCATGCAGATGGGTATCATCATGGTGCTCAAGCAGACCTGGAACAACTTCATGGAGCTGGGCTACCCGCTGATCCAGAACTGGTGGACACGGCGAAGGCTGAGGCAGGAGCACGGCCCCAACGCCAAGGCCAGCTTCCCGCAGTGGGAGAGGGACTACAACCTGCAGCCCATGAATGCCTACGGACTGTTTGACGAATACTTGGAGATGAGTATGTGCCCTTTGACCCTGAGGCCACGTTTAAAGCAACTGTCCAATggaaatctcacttttaaaactctTACAGTTTGGCTTCACCACCATATTTGTGGCAGCTTTCCCCCTGGCCCCGCTCCTGGCCCTCCTCAACAACATCATCGAGATCCGCCTGGACGCCTACAAGTTTGTCACCCAGTGGCGGAGACCCCTGCCCTCTCAAGCCAAAGACATAGGGATCTGGTACGGCATCCTGGAGGGCATCGGTATCTTGTCCGTCATCACCAACGCCTTTGTCATCGCCGTCACCTCCGACTTCATCCCACGCCTTGTCTACGCATACAAGTACGGCCCGTGTGCCGGGCAGGGCCGGGCCGGGGAGAGGTGCATGATGGGATATGTAAACGCCAGTCTATCGATGTTCAGAGTGTCTGATTTTGAGAACACTTCGGTGCCCAGGACAGATGGATCGGATATGTTTGGAGAAGCAGTGAAGTACTGCAGGTACCGTGACTACAGAGAGTCCCCGGACTCGCCCGGTGAACCATACTCCTACACGCTACAGTTCTGGCATGTCCTGGCCGCACGGCTGGCCTTCATCATAGTCTTCGAGCACATGGTTTTCACCATCAAGAACCTGATCGCCTACCTGATCCCAGACCTGCCCAAGGACCTGCGTGACCGCATGCGGAGGGAGAAGTACCTGATCCAGGAGATGATGTACGAGGCCGAGCTAGAGAGACTGCAGAAGGAGAAGAACGAGAAGAAGAAGAATTACAGGGCCCATCATAACGCATTGCCCTGAATGCACAAGCAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500173 lncRNA downstream 1579 61425093 ~ 61426132 (-) True G1314969
TU1500170 lncRNA downstream 5695 61421811 ~ 61422016 (-) True G1314967
TU1500163 lncRNA downstream 19902 61407576 ~ 61407809 (-) True G1314961
TU1500158 lncRNA downstream 20310 61406881 ~ 61407401 (-) False G1314961
TU1500200 lncRNA upstream 2531 61468518 ~ 61468718 (-) True G1314987
TU1500185 lncRNA upstream 8937 61474924 ~ 61485677 (-) False G1314981
TU1500187 lncRNA upstream 8937 61474924 ~ 61477861 (-) False G1314981
TU1500189 lncRNA upstream 8937 61474924 ~ 61485677 (-) False G1314981
TU1500190 lncRNA upstream 8937 61474924 ~ 61485677 (-) False G1314981
XM_021563936.2 mRNA downstream 12621 61409908 ~ 61415090 (-) False LOC110490513
XM_036944899.1 mRNA downstream 12621 61409908 ~ 61415090 (-) True LOC110490513
XM_036944895.1 mRNA downstream 38664 61358996 ~ 61389047 (-) True LOC110490512
XM_036944896.1 mRNA downstream 38692 61358996 ~ 61389019 (-) False LOC110490512
XM_036944897.1 mRNA downstream 40932 61358996 ~ 61386779 (-) False LOC110490512
XM_036944900.1 mRNA upstream 9589 61475576 ~ 61477946 (-) True LOC110490514
XM_036944901.1 mRNA upstream 17114 61483101 ~ 61485762 (-) True LOC110490515
XR_002468711.2 mRNA upstream 55765 61521752 ~ 61524082 (-) False LOC110490517
XR_005036156.1 mRNA upstream 73406 61539393 ~ 61557927 (-) True LOC110490518
XM_021563966.2 mRNA upstream 147950 61613937 ~ 61633036 (-) False LOC110490529
TU1499377 other downstream 655223 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 2003404 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 2736329 58689604 ~ 58691382 (-) False G1312023
TU1496820 other downstream 2736697 58689604 ~ 58691014 (-) True G1312023
TU1496827 other downstream 2737354 58634282 ~ 58690357 (-) False G1312023
TU1500688 other upstream 144433 61610420 ~ 61612116 (-) True G1315398
TU1500823 other upstream 368639 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 369391 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 399043 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 399043 61865030 ~ 61891421 (-) False G1315519

Expression Profile