RNA id: XR_002468711.2


Basic Information

Item Value
RNA id XR_002468711.2
length 2193
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110490517
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61521752 ~ 61524082 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatAGTGATGTTTAGCAATGGTGATAGTAACTGTCACAGCATTAAATGTATATTatttaatataataattataataatctaTCCCGCCGTTCTTCTTTCAGGGCCCCACAAAATCCAGTCATTTGGAAGAAGTTGTTTCAGCGAACAACATGTCAGCAATTAGCACATTAACAGGTGGGTCGGCTGGTGCCACCATCACACATACAGGTCACGAGATGTGCTGGGCTCACCCTCCATGAATCCCAAGAATAGGAGTATAAAAGGAGTTTGAAAGCTCCAATTCAGCTCGAACTCAACCTTACATGACTCCAGTTCCCATCACCAACTTGACTCCAGTCCCTTGTTGTTCAGTCCTGCTGTTTCCACCCAGCGGTTTAGTTGTGACagtggctttcaatgagaatccAGTTGGCCTTCCCTCTCTTGTACCCCTCATTAACGTTGGCCCCCATGTCAGAGCCCTGGACTGCAGAGGGGAAGGCTCTCATGGTGTCTCTGCTGTACGGAGAGCCAGGTCTGATCCCAGCCATGAGGAGCCCACAGGCGGGGAGCCCTGTTTAAAATTCCGCTCTGCAACGTGTCGGCTTTCCAATCCACCGGGATTGCATTATTAAACTTACACAAGCTCATTTCCATACAAAGCAGGATATCAGCGGCAGAGTCATGCATATTTATCGCCGTGTGCCTGGCTTACGCACGAATACACTCGCACAATAACCCGCACGCAGGCATAACTTAGTCGTGGTACATAAGTGAGGGAGGAAACCGAGGTGCATTCCTAATGGTTTGAGCATGAGAGGTCCTGAGTGAGGATGGTCAGTGAAATCTACATGTCAATCACCTGACAAACCGACACATAAATAGGCAGtttctcacacacaaacaggggAGATGAGATGAGTTACACTTTGAGATCTGACGAGAAGTGTTTTACTGATAATCTACATGCACAGTCATGCACACACGGTCCAGCCAAGCCTCCACTTGTCCATTTTGACTGTTCCCTGCTAGTTGCTAGTTCCCTTAATGTCCCGACTCCCTACTCTCAGTTCCATTTCCCTGCCTGTGTCTCCCCCGTTCCTGCTGCCCCactgttcttctcctcctccactagTTTCCGAGCAccggtttctcctctcctcctcctcctccccctcttttcttCCTTGCCCTCCTTCAGGTGATGTccgtccctcctcctcctcctcctgtgagATTGCTGCTGTGTCTTATGGCTTTTTATTCCTACGTGAGGGTAGATGTGTTCATGTAGGGATAGAAGCCACTAAACACACAGTGAGAGGTCAACGTGCAGGCCAGTAGAGCCAAAGCTTCCTTTTCCACACAGAGCAAATAGCCTGCGGTGACGTTACAGTGGAGTTTGCTGTCTAACTCTAGGCCTACATGCAACCATTAAGTGACTTCAAAACAGAAATGCCAAACACATAGGCCTAAACAGAGTAGCAAATCTCTAAGACCCACCAACGAAAGCCCAGTACTAAAGGCTGTAACAAAGCCGAAGAAAGTCCTAAGATATAGTCCAAAACCAGTCTGTAATTCACTGGTTATCAAACAATCTTGTTCAAGAAATCCTTAAGAAAAGGGATGACATTTCTCTGCTGACAAATGGATGGAATACTTCAAGCTAAGGTAGGTCCACTACATCCATCTAAACTGAGGTGAGTTTCGTCCAGGTTCCCAACCCCAAATAGGCTGAACATTAGAATCCTGAGATGAATCATTGTAAAGTGTAAAATGTTATTCTATGTGCTTTATAATGATGACAAATAAAACCTACTTCTAGCTGCCATCATAGCTGAAGTGTAATAATTCAACACCCTCACTAATGTACATGAATGTACAGGAATGTTCACGCGTTCAAGCATCAATTATTGACAGTGTTTTCTATAGACCTCCAAGCTTTCAGGGAGAATGTGTTGGAATAGATTACTGCCAATGGATTCACTGCCTGAGGCTGCGTGTGCCTGTCTGTTTTCCTGAGTTGAGTTGATGCATTAATATGAAGTCTTTGTATGTATATACATGCATCTCTGTCTTTTAAGAATATATCTTCTGGCAGACTTAGATTTTCCTGTAATAAATAATGCTCTTTTGTGTTTTGCCGTTCTTCATTTGTTTTCTTTCATATTTTCAATGGTGGGACTTGATGAATAAATTATGCATTCAGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500218 lncRNA downstream 18102 61503142 ~ 61503650 (-) True G1315000
TU1500211 lncRNA downstream 28596 61492789 ~ 61493156 (-) True G1314993
TU1500185 lncRNA downstream 36075 61474924 ~ 61485677 (-) False G1314981
TU1500189 lncRNA downstream 36075 61474924 ~ 61485677 (-) False G1314981
TU1500190 lncRNA downstream 36075 61474924 ~ 61485677 (-) False G1314981
TU1500251 lncRNA upstream 122 61524204 ~ 61524452 (-) True G1315024
TU1500252 lncRNA upstream 384 61524466 ~ 61524685 (-) True G1315025
TU1500259 lncRNA upstream 3088 61527170 ~ 61527699 (-) True G1315032
TU1500263 lncRNA upstream 5552 61529634 ~ 61530472 (-) True G1315036
TU1500270 lncRNA upstream 11154 61535236 ~ 61535517 (-) True G1315043
XM_036944901.1 mRNA downstream 35990 61483101 ~ 61485762 (-) True LOC110490515
XM_036944900.1 mRNA downstream 43806 61475576 ~ 61477946 (-) True LOC110490514
XR_002468710.2 mRNA downstream 55765 61427711 ~ 61465987 (-) False LOC100653449
XM_021563938.2 mRNA downstream 55768 61426711 ~ 61465984 (-) False LOC100653449
XM_021563939.2 mRNA downstream 55769 61426711 ~ 61465983 (-) False LOC100653449
XR_005036156.1 mRNA upstream 15311 61539393 ~ 61557927 (-) True LOC110490518
XM_021563966.2 mRNA upstream 89855 61613937 ~ 61633036 (-) False LOC110490529
XM_021563965.2 mRNA upstream 89855 61613937 ~ 61646356 (-) False LOC110490529
XR_002468713.2 mRNA upstream 89855 61613937 ~ 61646356 (-) False LOC110490529
XM_021563964.2 mRNA upstream 147561 61671643 ~ 61676140 (-) True LOC110490528
TU1499377 other downstream 749264 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 2097445 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 2830370 58689604 ~ 58691382 (-) False G1312023
TU1496820 other downstream 2830738 58689604 ~ 58691014 (-) True G1312023
TU1496827 other downstream 2831395 58634282 ~ 58690357 (-) False G1312023
TU1500688 other upstream 86338 61610420 ~ 61612116 (-) True G1315398
TU1500823 other upstream 310544 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 311296 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 340948 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 340948 61865030 ~ 61891421 (-) False G1315519

Expression Profile