RNA id: XM_021563964.2


Basic Information

Item Value
RNA id XM_021563964.2
length 2855
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110490528
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61671643 ~ 61676140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGCAATACATTTTCAGCCGAAGCTAAACACGCCTACACGGGCGCCCGGACAGGATGAATCGAACCCCCTTAATGTTCCGTCAAAGCGGACACAAATCTGGGTTTTCCGAGATTACCCACGACCCAACCCAAACAACAACCCAAACAGGAAGTGTAAACACTTCTCACGTAACAGCAGCGCATGTGATAGCCCTTCTCTTCGACTCCTCAGCATTCACCACTTGGGACTCAGTTGGTTGGTGTGTGCACCAGAATAGTCGAGACCATGGACTCGATCAGTTGTTCGATCTGCCTGGATCTACTGAAGGATCCAGTGACTATTCCCTGTGGACACAGCTACTGTAAAGGCTGTATCAAGGAATATTGGTCTCTTGATGACCAAAAGGGAATTCACAGCTGCCCCCAGTGCCGACAGACCTTCACCCCAAGACCTGCTCTGAATCGAAACATTCTGCTGGCTGAGTTGGTAGAGAAATTGAAGACCGATTTCAAAACGGTTCCCTCTGCTTCTTGTTTCCCTGGACCTGAAGATGTGAAGTATGGTCGTGATGACTCAGCCGCAGCAGCAGAGAGGACGGAGAAACAGGGGCAGTTGAGGGAGAAACGGCAGCAGGTCGGGCTGAGaatctgtgtgagagagaaggagatgcagGACATAAGACAGGCGGTGATGTCCCTTTCACTTTCTGCACAGGCAGCAGTGGAGTACTGTGAGCTGGTCTTTGCTGAGCTGATCCGCTCCATTGAGAGAAGGCGCTGTgaggtgaaggagctgatcaGCGCCCACCAGAGGGCGTCAGTAAGCCAGGCTGAAGGACTCCTGGAGCAACTGGAGCAGGAGATAGCTGAGCTGAAGAGGAGAGATAAGGATCTGGAGCAGCTCACACAAACAGAGGAGAACATTCATTTCATCAAGACTTTCCAGTCTCTTTGTGTGGCTCCTGCATCTGAGCTCTTACCCTATATCACTGCCAACCAGCACTTCTCCTTTGAGGAAGTGAAGAGCTCCATCTCTGGAATGATGGAGCGACTGGAGGATGTGTTGAAGGAGGAAATGGTCCAGATACCTGGAAAAGTAACGGCTGCCTCCGAAGTCTGTGTCCTCAGCCCTAGACCAGAATTAATGGCTGCCGCTGAAGTACATTTCCATCATGAGCCCAAGACCAGAGTGGAGTTCTTGGAGAACTACTGCCATCTCACGTTGGATCCCAACTCAGCGTATCAACACCTGCGTCTGTCTGAGTGCAATAGAGAAGTGTCATGGAGTGACAAGGCTCTGTCTTATTCTGACCACCCAGACAGATTCACAGACCATTACCAGGTGTTGTGTAAAGAGGATCTGTCTGGAACCCGCTACTGTGAGGTGGATAGGAGGGGGGAGTGTGAGGTAGCCATCACATACAGAAGCATCAGCAGGAAGGGCGGATTGGAATGTTGCTTTGGTTCCAATGATCAGTCCTGGAGTTTGGTGTGTCGCAACTCGAGTTGTTCCTATTGGCACAATAAGAATAGGACTGATATCCCTGTCCCCTGCTCCaccagagtaggagtgtatctggacaGCAGGGCAGGGACTCTGGCCTTCTACAGCGTCTCGGATACAATGACCCTCCTCCACAGagttcagaccacattcactgaGGACCTCTGTGCTGGGTTTTGGGTTGGTCCTGGTTGTGGATCATCTGTGGCTCTGTGTTGACTGAACTTCATAGAATCAagtgtatttcaaatcaaattgtatttgtcaaatgccccgaatacaacaggtgtaggttttactgtgcttacttacgagcccttttcccaacaatacagagttaaAAAGTAGGGGGGTAAATGAATGAAACAGTAACACAAAatgacgaggctatatacaaggagtacctgTACCgactcaatgtgcaggggtatgaggtaatatgtatatgtaggtaggagtaaaagtgactaggcaatcaggatagataaacagagtagcaccAGTGTATGCGAAGAGTGTGAaactctgcctgtgtgtgtgtgagtgtgtgggtagagtccagtgagtgtataGAGCCAGTGGTCAATGAAAATATGAAGGAAATATAAGACGGATCACTTGGGAAAACTGGAGAAAGTTGATTTGCTTAAAATCGTGACATGGATGAAGGGAGTTGACACTTCATTTAGGAGTCCTGCTGCGAAGCCGCTCTTTATCTACAATGTTTGAGTCAAGCTTTACTATTGGGGAGGGCTGGGACCTATGTTTTAAAGATTACATtaataaattaaatacatttttgtttataGTATAATTTCTAACTTGATAAAATAAAGAACAAAACTACAGTTCCTGAGAGGGGGGGTTAGAGTTAGTATTGGGGAGTTGTTGTTTTGTTATGTGAGAAAAACCAGGAATTTGGATGATTGACAGTGATTGACAGTCCTAGATCCAGTGTTTCCCCTCGACCCTGTTCCATcctctgtgtttttgtcttggTTTGGTTCAATCAattcatcaaatgtatttataaagccatttgtacatcagcagatgtcacaaagtgctgtacagaatcccagcctaaaacccctaaCAACAAGCCATGCTGGTGTAGAAGCACCTTCTTGACCTTGTCCATTGACTGTCTTTTTAAATTACATGGAATGCTTTTTGATAAAGGACAGGTTATAGTTAGACTTTTTACTGAGAATAATACATTTGAACTTCTTACACCTCTTTGACCTGGAGGAAAATAAAATACATCCCAACTTGCAACCTgcctattaaaaaaaaataaagaaatactattttattttatCCAATTGAATAATATTGACATTTGTGACTATTTAACCATGtacattatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500692 lncRNA downstream 46584 61624841 ~ 61625059 (-) True G1315402
TU1500691 lncRNA downstream 47680 61623706 ~ 61623963 (-) True G1315401
TU1500690 lncRNA downstream 49059 61622371 ~ 61622584 (-) True G1315400
TU1500687 lncRNA downstream 56532 61613964 ~ 61615111 (-) True LOC110490529
TU1500689 lncRNA downstream 62871 61608145 ~ 61608772 (-) True G1315399
TU1500760 lncRNA upstream 48164 61724304 ~ 61724553 (-) True G1315459
TU1500762 lncRNA upstream 57198 61733338 ~ 61733753 (-) True G1315461
TU1500744 lncRNA upstream 64388 61740528 ~ 61741059 (-) True G1315443
TU1500765 lncRNA upstream 83935 61760075 ~ 61760276 (-) True G1315464
TU1500786 lncRNA upstream 112215 61788355 ~ 61788557 (-) True G1315485
XM_021563965.2 mRNA downstream 25287 61613937 ~ 61646356 (-) False LOC110490529
XR_002468713.2 mRNA downstream 25287 61613937 ~ 61646356 (-) False LOC110490529
XM_021563966.2 mRNA downstream 38607 61613937 ~ 61633036 (-) False LOC110490529
XR_005036156.1 mRNA downstream 113716 61539393 ~ 61557927 (-) True LOC110490518
XR_002468711.2 mRNA downstream 147561 61521752 ~ 61524082 (-) False LOC110490517
XM_036944905.1 mRNA upstream 1411 61677551 ~ 61685776 (-) False LOC110490526
XM_036944904.1 mRNA upstream 1411 61677551 ~ 61685779 (-) True LOC110490526
XM_036944906.1 mRNA upstream 16521 61692661 ~ 61704751 (-) True LOC110490535
XM_021563969.2 mRNA upstream 39402 61715542 ~ 61719175 (-) True LOC110490533
XM_021563970.2 mRNA upstream 43125 61719265 ~ 61723126 (-) True LOC110490534
TU1500688 other downstream 59527 61610420 ~ 61612116 (-) True G1315398
TU1499377 other downstream 899155 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 2247336 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 2980261 58689604 ~ 58691382 (-) False G1312023
TU1500823 other upstream 158486 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 159238 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 188890 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 188890 61865030 ~ 61891421 (-) False G1315519
TU1500893 other upstream 214744 61890884 ~ 61891421 (-) True G1315519

Expression Profile