RNA id: XM_021563944.2


Basic Information

Item Value
RNA id XM_021563944.2
length 3311
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110490520
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61804053 ~ 61822658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgccattcagagggtaaatgggcaagacacaaAATGTACGTGCCTTGAACGGGGTATTTttggtagtatgtgccaggcgcaccggtttgtgttgtGAACTGCAACACTCAGTGTACAGTAGTACATTATTGCTGTGAGCCCGTAATTAGGACCTTTATTTTGAAGACAATTTTGGACGCTGGAGTAATAGGCCTACTGGTGGCAAAGGTTTCACATCCTCTTTGTTCGTCGGCagtaacgttggctagctaggtTTACATTCTACCGTCTCATGCGGCGCTCACTAGCAAAGGTAGCTAAGATACTGATTGGCACATGGGCCATAATGGATTCCCCCATTCCGCTCTCCTCCCTGCGCCTTTTGGTTCCACCTCTACGACTGATGTCTGCATTTATGTGGCAGGTAGCACAACAGAGGGCCATCAAGCACTATGGAAAATTAGAGGAGTTTGTGACCGTGGTAACACAAACTGTCACAGAACTtatgactgacagacagaggacCCTCCTTATTTTGGGTCTGAGAGCAAGGGTAAACCCTGTCAGCCTCCAGACCCTCCTTTATAGAATAAAGTCTTCTCAACATGCACAGTCCAATGATGCAGGCATGGAATCACCTGAAGCTAACTTTGCCAAGCTCACCCAAAGCTTGATTATAGACCCGGTTGAGCGTGAACACTTCGTCCATGTGGTGTTTCCTGAAGAATTCAGACCTGATTTTGACCAAGTGCTTCAGGAACTGGTCTGTGACTTTCTCACTCGGCTGGAAGAGCTGCTTACACTACCAGACTTTAAGCAGACTGCATTGTTGCTGAGTGCTGGCTCCTCTGGCCTAGATGAATGCCTGCAGTCTTTCTCTCACTCAGAAGATCTCCAGTTTCTGCTCCAGAATTACAAACAATGCAGAACATTGTACACAAACATTTCCTCCTCTGACATTCCTCAGGAATCAGATATTGAATCTGATGCCTTCCCTGACCAGTTAAACCGTACCAATCTGGACACTGGTGTGGGGATGAGGACTGGGACACAAAGCAGAGACTGCCAAAGGATGGAGTTGGCATCACATTTAGTTGAAATGGGGAGCACAAGAGATATTATAGGCTGCGATGAAACCTGTGATGAAGGGAATGAAGATGACATTGATGTAGAGGACGACCCAACACAGAAAAGGGCTGGTTCTGGTCTTTCTCCTACCAGTGTCGTGCAAGGTGGTGATACAGACACCGTTGCAGGGGTGTCGTTTCAGGTGTTGACTCCCCTGTCTTCAGCTTCAAATGAGTGTGCCCCATCTACTTCCAGTTCATCACACATGGTTGTCCACCAGTGTCCTCAGTGTGGGAAGTGCTTTAATTATCAGTCTCAACTTGTCCAACACCAGCAAATTCACTGTGGGGATAATCCATACAAGTGCTCCAACTGCGGGAATAGATTCAAATTCTTTACAAGTCTGTCAAACCATAAGAGGATGCAATGTGTGGGCACTGCCTTTAGCTGTTCCAAGTGCTGGAGAGAGTTTGGTTCTCTGCGTGAGAAATTGAGACACCAGTGTCCACACAACGAAGTCATGTACATCTGTCCACAGAGCGGGAAGAGTTTTAAGACGCCACAGCAACAACCATTCCAGTGCCGTCATTGCGCAATGGCCTTTTCCGAAATGGATCAACTGCATGCTCACGAAAAAATTCACGGAATCGCCCAAAATCTTGACTGTCACACATGTGGAATGACCTTCAGCAACTTGCCCAGCCTCGTGCACCACGTGGAAGCCCACAAGAGGTCGGATCTGAGGCCATCGTCGCACCttccaaagaagaagaaaggaTTGCAGCTTCCGAAAACTCACCACTGTCACCAATGTGGAAAGTCTTTTGTAACAAACCGACGCCTTAAGGATCATGTTCGTACTCATTTAAATTATCGTCCCTTCCCCTGCTCCTACTGTGGGAAATGTTTCACTCAGAAAGGTAATCTCAATGTGCACATAAGGATCCACACAGGGGAGAGACCCTACATGTGCTCTGTGTGTGGGAAGACCTTTCAGTCAGCAGGGAATCTGCAGGTACACCAGCGCTTTCACACTGGGGAGAAACCTTACCAATGCAAAGAGTGTGACAAACGTTTTACAAAGTCGAGCCATTTAGTGGTCCATATGCGTGGGCATACTGGAGAGCGTCCCTTCACTTGTAATGAATGTGGAAGGAGTTTTATCCGGAAAACTTGCTTAAAGAAACATTTGCTAGTTCATTCAGGGCAGAAGCCTTATTCACGTCCTCGTTGCCCGAATAATTCCAAACGCAGTTCACAACCAAGCTATCATATGAAGGAGAATCCTACTAATGCGACTGCCATGACTGGACATGCGACTGCCATGGCTGGACATGCGGCCGCCATGGCTGGTCATGTGGCCGCCGTGGCTGGACATGTGGCTGTACCAGCGATCTATCATGACAGCCTTAACATAAAAATGTTGGCACATGTTGGCATGTCCCGAGGCTATGCCATGGAGAGACTAGGAGGCGGTCCTTCAAATTGTTGAACGCTGCCATGCGCGTGGAAAAATGTCCCAATACTTTCCTCCTGGCCTGACCTCTCACTTTTGAGTAACCCTCTTAGTTGGGAGTGCAATTCGCTAGCGAAGCAACAAGTTATGGGGAAAAATCAATACCAGTCCAGAGAGATTAATGGGTGTTCTAATTATTGTTAACATGGAAACAACTGCATTTTTCATTGTAGGTTTTTAACAATCGCTCTGCAATGGCTTCATGCACGGAATTGAATTGGAACAACTAAGAATTTATCATTAACACAGaaacaaaggaattgtccattgtAGGTTTTCCAAAAACGTGCGGCAATGGTGTCATTCACTGATGGGGGAGGGGCTTTGGTAGGTGAGGTGGGGTGTAGACTCTAGTCTTTCTCTATACATCATGTCTCAGAACCTCATCAAGTAGCTCATTTGGTTGCCAAGGTTACCGGACCAATTAAGAAGCTACTTTATAGTTTCATGTGATGTTCTGTTTTTCTCATTACAAATATTATTCCTTTACAGATGTATTAGACATGTAGAGCTGTTTGCATGTACACATGTTTATGTAATAGGAGCGGTAGTCATGGATAGAGGGTGAAATGCATGTGCAATTGTAATATAAGTATTTACTCTAACAGTAATAATGATAATGTGTTATTTGATAAGCGTATTTCTAGACTTTCAAGGAATCTAGAAAAGTGTATTTTCTGGTGTTATATTTGGAGGGTTGTGATATTCTTTGTTATACCTATTATTAAAGGTTTTAATACTTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500786 lncRNA downstream 15496 61788355 ~ 61788557 (-) True G1315485
TU1500765 lncRNA downstream 43777 61760075 ~ 61760276 (-) True G1315464
TU1500744 lncRNA downstream 62994 61740528 ~ 61741059 (-) True G1315443
TU1500762 lncRNA downstream 70300 61733338 ~ 61733753 (-) True G1315461
TU1500760 lncRNA downstream 79500 61724304 ~ 61724553 (-) True G1315459
TU1500806 lncRNA upstream 484 61823142 ~ 61823364 (-) True G1315499
TU1500820 lncRNA upstream 11968 61834626 ~ 61835158 (-) False G1315509
TU1500829 lncRNA upstream 12035 61834693 ~ 61835158 (-) False G1315509
TU1500825 lncRNA upstream 12104 61834762 ~ 61835158 (-) False G1315509
TU1500821 lncRNA upstream 12143 61834801 ~ 61835158 (-) False G1315509
XM_021563958.2 mRNA downstream 5556 61791810 ~ 61798497 (-) True LOC110490525
XM_021563943.2 mRNA downstream 44476 61744166 ~ 61759577 (-) True LOC110490519
XM_021563962.2 mRNA downstream 72106 61726204 ~ 61731947 (-) True LOC110490527
XM_021563963.2 mRNA downstream 72113 61726204 ~ 61731940 (-) False LOC110490527
XM_021563970.2 mRNA downstream 80927 61719265 ~ 61723126 (-) True LOC110490534
XM_021563946.2 mRNA upstream 14178 61836836 ~ 61842089 (-) False LOC110490521
XM_036944908.1 mRNA upstream 14178 61836836 ~ 61842089 (-) False LOC110490521
XM_036944909.1 mRNA upstream 14178 61836836 ~ 61842089 (-) True LOC110490521
XR_002468714.2 mRNA upstream 27709 61850367 ~ 61861260 (-) False LOC110490536
XR_005036157.1 mRNA upstream 27709 61850367 ~ 61861261 (-) True LOC110490536
TU1500688 other downstream 191937 61610420 ~ 61612116 (-) True G1315398
TU1499377 other downstream 1031565 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 2379746 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 3112671 58689604 ~ 58691382 (-) False G1312023
TU1500823 other upstream 11968 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 12720 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 42372 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 42372 61865030 ~ 61891421 (-) False G1315519
TU1500893 other upstream 68226 61890884 ~ 61891421 (-) True G1315519

Expression Profile