RNA id: XM_021563946.2


Basic Information

Item Value
RNA id XM_021563946.2
length 2757
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110490521
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61836836 ~ 61842089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACGTCATATATAAACGACGACCGTGAATGTTCGGTTATTTTGCTTCtcatctagctagctagatagctaaccaGCTTGTGAATTTTGGGAAAATGGCTGAATCGTTTGAAGAACGTCTCGTAAAAGCTGTCAAAGAGCATACACACTTGTATGATACCTCAATGCGTTTACATTTCGACAAAGAGGCTCTCGAACACAGTTGGCGCGAAATTGCTACATATTTAAACTCCGATCCAGATACTTGCAGGAAGAAATGGAGACTTGCAAGGGACCGTCATGTGAGAGCACTGAAAAAGTCTAAGGACATGCCAGAGGGTGTACCGAGGCCTGGAAGCCTGAGTTGGCTCACCATTTTTATAAAACATCGGCAAACCAACCCAAACTTTCCCGAGATCTCAGCAGACAGAGTTGCGAGTCCTAATGACAACCTGGATCAGACTCCCTTGTTTTCAGACCAGGCAGGTCCACTGTTCCCTTTATCATCTTTCCGTCTCCTGGTTCCACCTCTACGACTGATGTCAGCTTTCATGTGGCAAGTGGCTCAAGAGCGTAATGTGATGCACTATGGGAAGCTGGAGGAGTTTGTGACTTTGGTGACAGAGATGGTTCCAGAGCTGCTGAGCTCCAGGCAGAGGACCCAACTCATCCTGGGTCTGAGAGCAAGGATGGTTTTAGAGTTGTTTCGTAATGAAAACCCACCGGACCCCCAGACCATCCAACTTAATTTGGACAGAATCAAAACTTCTTCGGTACATGCTGTGCACAAGGATTCACAGAGTAGAAATGAGTTGGAGTCTTCAGAGTCTAACTTCGTGGAGCTGGTCAAAACCCTGCTCGAAGACCCTTCTGAGAAGAAGCACTTCTTCCAGgTGGTGTTCCCAATACGTTATGGCCCTCGGTATGACACAGCACTGCAGATACTGATGTGGGAGTTTCTCTCCCGACTGGAGGAGCTGCTGCCTGTACCAGACCTCACAGAGACAGCATCTCGTCTCAGCCTTGCCCCCTCTGACCTGGAGGAGTTCTGGCATTCTGTCTCTGACCCCGAGCACCTGAAGACACTGCTGCAGCATCATAGACATCTGGGTCACTTGAGCAAAAATGAATTCTCCAACCAGGTCGCAGACAACATCTTGTCCACATTGTCAATTCCTCAAATTCATGGCCTGAAGTCAAGCCTTGATGGACATGAAGGCATGAAAGGGAGCACAGAGGGGTGGAAGATCAACagtgaggaaggaggagagttGCATTTTGAAAAGAACTTGGAGGATGATGGAAGTGAGAGAAATGAAGACACTGAGAGGGGATTGAAGGATGAGGATGACGCAAAGTGGACCTCGCCTCTGAGTGAACCAGAGGACTCGGATGAACCGGCTAGTGACATGCCCTCCCAGGTCTTCTCCTGCCCCCAGTGCCCATTCTCCCACAGGGAAATGGTGGACCTTCATCAGCACATCAGGAAGGAACATCTAAcagaggaggacagcaggagCCTGGACTCTGGAGGAGCTGAGAACTCACTGCCATCCAGTCAAACAGCCAAGAGCTCCTCAGCCAAGAGCTCGTCAGCCAAGAGCTCGTCAGCCAAGAGCTCGTCAGCCAAGAGAATCAATAACAACACCTGCAAACAGTGTGGGAAGGGTTTCAGATGCACAACTGACCTGAAACGACACCAAAGTGTTCACACCAGTGTGCAGCCGTTCCGGTGCAATCAGTGTGAGAAGAGATTCAAATCGGAGAGATATCTACAATTGCACAAGAAAAGTCACGACGTAGAACCGATGCACAGGCCTATTTGCCAGCACTGTGGCAAGAGTTACACTAGTGCAGCTGTCCTCAAAATACACATACGTACCCACACCGGAGAGCGCCCTTACTCCTGCTCAGTCTGTGGGAAGAAGTTCAATCAAAAGCACACATTAGTTAGACACCTCCGGATGCACAAAGGAGATAGACCATACCTGTGTAGCGTATGCGGGAAGGCTTTCTTTGTTTCCGGGGAACTCTTAGTGCACATGCGTTTTCACACAGGGGAACGACCTTACCGCTGTAAACCGTGTGGAAAGGCTTTCAGCACGTCATGCGCTCTCACGTCGCATAAGCGATGGCACTCAAACGAGCGCCCGTTCACCTGCTCCCTGTGTTCAAAGGGCTTTGCGGAAACTGGTGGCCTTAAAAGACACATGTTTATTCATACCGAGGAGAAGCCCCATTACTGCCACACGTGTGGGAAAGGATTTAGTCAGTTGAGCAACATGAGAATACATTTGAAAACTCATAAAAAATAATGTCATTGGCTCTTTGTCAGACTAAAGGAATTTTTAACTAGTGTAATGTTTATTTCTCCTTGAGCTCAAAGCCAAAAGTAGGGAAAAAATAATTGTATTATAGGTAATGTACATCGTCCTGACAAAGTATCCATTCTGTTATTTTCCCCTTGGTAATGTGATCTGTTGTTAAAGAACTTTGGGCACAGACTTCACAATGACACGGAGGTTTTACTTAGTGCACTGCCAACTGCACTGTACTCTGTGAGCACAGTAGGGTTAACATGGTGTAAGGATCACATGTAGTTCGTGTAGGCTGTTCTGTACCTGAAGTAATGAAAAGTTTTGACTGCAACTATCAAGTTGTCTTTTTAATAATCATTCATGTGTTTTGGGGCAAGCTCCTGATGTATGTTGGAACAGAGTCCTCCCTTTTCtcctacatttttattttcagtcAGGCACCTGATTCCCTTCTGGTTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500830 lncRNA downstream 263 61836351 ~ 61836573 (-) True G1315509
TU1500822 lncRNA downstream 834 61835475 ~ 61836002 (-) False G1315509
TU1500820 lncRNA downstream 1678 61834626 ~ 61835158 (-) False G1315509
TU1500829 lncRNA downstream 1678 61834693 ~ 61835158 (-) False G1315509
TU1500825 lncRNA downstream 1678 61834762 ~ 61835158 (-) False G1315509
TU1500900 lncRNA upstream 25299 61867388 ~ 61868018 (-) True G1315522
TU1500869 lncRNA upstream 32906 61874995 ~ 61977959 (-) False G1315518
TU1500852 lncRNA upstream 56902 61898991 ~ 61952044 (-) False G1315518
TU1500915 lncRNA upstream 61362 61903451 ~ 61912714 (-) True G1315537
TU1500916 lncRNA upstream 62060 61904149 ~ 61904533 (-) False G1315538
XM_021563944.2 mRNA downstream 14178 61804053 ~ 61822658 (-) True LOC110490520
XM_036944907.1 mRNA downstream 14803 61804053 ~ 61822033 (-) False LOC110490520
XM_021563958.2 mRNA downstream 38339 61791810 ~ 61798497 (-) True LOC110490525
XM_021563943.2 mRNA downstream 77259 61744166 ~ 61759577 (-) True LOC110490519
XM_021563962.2 mRNA downstream 104889 61726204 ~ 61731947 (-) True LOC110490527
XR_002468714.2 mRNA upstream 8278 61850367 ~ 61861260 (-) False LOC110490536
XR_005036157.1 mRNA upstream 8278 61850367 ~ 61861261 (-) True LOC110490536
XR_002468721.2 mRNA upstream 216521 62058610 ~ 62062523 (-) False LOC110490558
XR_002468722.2 mRNA upstream 238882 62080971 ~ 62083812 (-) True LOC110490561
XR_005036163.1 mRNA upstream 284449 62126538 ~ 62129743 (-) False LOC118938820
TU1500823 other downstream 630 61834626 ~ 61836206 (-) False G1315509
TU1500832 other downstream 834 61835378 ~ 61836002 (-) False G1315509
TU1500688 other downstream 224720 61610420 ~ 61612116 (-) True G1315398
TU1499377 other downstream 1064348 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 2412529 59420247 ~ 59424307 (-) False G1312865
TU1500894 other upstream 22941 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 22941 61865030 ~ 61891421 (-) False G1315519
TU1500893 other upstream 48795 61890884 ~ 61891421 (-) True G1315519
TU1500878 other upstream 50582 61892671 ~ 61973695 (-) False G1315518
TU1500860 other upstream 86079 61928168 ~ 61969268 (-) False G1315518

Expression Profile