RNA id: XR_005036157.1


Basic Information

Item Value
RNA id XR_005036157.1
length 1743
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110490536
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61850367 ~ 61861261 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAACACGggagacttttattttgaagactcATGATTTGTGGTCACAACAAAcattactgacacctacccatgagcccaCTCTTTTTCATTTACTATAACAAGCATCCTCAACCACTGAGCACCGACCAACACTGGATGTCCATGGACGTTGAAAACGTTTCAAGCCTCCAAGCTGGCTACCTAACGTTAACATACCGTCGTAGCAGCATTAGCAGCTTGTTTTGCTGGCGATATGGATTCAAAAGCATCCATGTGGCACGTGGCTGAGCAGCGTAATGTGATGCAGTATGGGAAGCTGGAGGAATTTGTGACTTTGGTGACAGAGATGGTTCCAGAGCTGTTAAGCTCCAGGCAGAGGACCCAACTCATTCTAGGACTGAGAGCAAGGttcttaacaagaaagaaacaagaAAGTGGAGGCATCAAAGTCTAACTTTGTGGAGCTGGTCCAAACCCTGCTGGAAGACCCAGTGAAGAGGGAGCACTTTTTTCAGGAGGTGTTCCCAGTGCTGCAGATTCTGGTGTGACACAGCACTGCAGATTCTAGTGTGGGAGTTTTTCTCCAGATTGGAGCAGCTGCTGCTGGTACCCAGCTTTACACAGACAACATCTTGTCTCAGCCTTGCCTTCTCTGACCTGGAGGAGTGTGTTCagtctgtctctgaccctgagCACCTGAAGACACTGCTACAGCATCAAAGACACCTGGGACACCTAAACAGAGATCATTTGTTCTACGACTCTGACACCATCCTGTCCGCTCTGACCCTCACTTCCTTGGTAAACTGGAAACAAACTTCAGTGGAGGCTTGAGGTCGTGACACTAGTTCTGGACAGCAGAAACCAGGATCATCACTACACGCGCGCCCAATGGCCGTTGACGGCAGAACCGGATAGTGACATGCCCTCCCAGGTCTTCTCCTGCACCCTGTGCCCATTCTCCCACAGGAGAGAGGTGAACCTTCAGCAGCACATCAGAAAGGAACATCTAGcagaggaggacagcaggagCCTGGACTCTGGAGGAGCTGAGAACTCACTGCCATCCAGTCAAACAATACAGAGACCCTCAATCAAGACAACCAAGAAGTACATCTGCTTTAAATGTGGAAAGGGTTTCAGAAGCCCATCGGACCTGAAACGACATAAGGGTGTTCACACAGACATGCAGCCGTTCCATTGCAACCAGTGTGATAAAAGATTCAAAGCGAAGGGTAGTCTAAAACAGCACCAACGGGTTCACTCAGGAGAAAGGCCTTATGATTGCTCACATTGTGGCAGGGGGTTTAGGACATCAGATATCTTAGTCTCATTTACGCATTCATACTGGGGAGCGATCTTATGGGTGTACAatatgtgggaagagatttgttCAACGGCAAGTACTAACAAGACTCATTAGGATGCACAGTGGAGAGAAACCATACTTATAGCATTTGTGGAAAGACCTTCGCATGCTCAGGGGAGCTGATGTTACACTCAAGGATCCACACAGGGGAACGACCGTATCATTGTGAACAATGTGGGAATACTTTGTCTAGCAAGTAAACTGAAAGTTCATCAACAAAGTCATACAGGCGAACACCCATACCCCTGTACACAGTGCCCCAAACGCTTCTCCACCTCCACCAGACTAGTGAAACACATGCGAATTCATACTGGGGAGAAACCTTACCCATGTGTAAAGTGTGGCAAAAGATATTCTGGAAGGGGAAACATGAGAATACATCAATGAATGcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500830 lncRNA downstream 13794 61836351 ~ 61836573 (-) True G1315509
TU1500822 lncRNA downstream 14365 61835475 ~ 61836002 (-) False G1315509
TU1500829 lncRNA downstream 15209 61834693 ~ 61835158 (-) False G1315509
TU1500900 lncRNA upstream 6127 61867388 ~ 61868018 (-) True G1315522
TU1500869 lncRNA upstream 13734 61874995 ~ 61977959 (-) False G1315518
TU1500852 lncRNA upstream 37730 61898991 ~ 61952044 (-) False G1315518
TU1500915 lncRNA upstream 42190 61903451 ~ 61912714 (-) True G1315537
TU1500916 lncRNA upstream 42888 61904149 ~ 61904533 (-) False G1315538
XM_021563946.2 mRNA downstream 8278 61836836 ~ 61842089 (-) False LOC110490521
XM_036944908.1 mRNA downstream 8278 61836836 ~ 61842089 (-) False LOC110490521
XM_036944909.1 mRNA downstream 8278 61836836 ~ 61842089 (-) True LOC110490521
XM_021563944.2 mRNA downstream 27709 61804053 ~ 61822658 (-) True LOC110490520
XM_036944907.1 mRNA downstream 28334 61804053 ~ 61822033 (-) False LOC110490520
XR_002468721.2 mRNA upstream 197349 62058610 ~ 62062523 (-) False LOC110490558
XR_002468722.2 mRNA upstream 219710 62080971 ~ 62083812 (-) True LOC110490561
XR_005036163.1 mRNA upstream 265277 62126538 ~ 62129743 (-) False LOC118938820
XR_005036162.1 mRNA upstream 265277 62126538 ~ 62130465 (-) False LOC118938820
XR_005036164.1 mRNA upstream 265277 62126538 ~ 62130465 (-) True LOC118938820
TU1500823 other downstream 14161 61834626 ~ 61836206 (-) False G1315509
TU1500832 other downstream 14365 61835378 ~ 61836002 (-) False G1315509
TU1500688 other downstream 238251 61610420 ~ 61612116 (-) True G1315398
TU1499377 other downstream 1077879 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 2426060 59420247 ~ 59424307 (-) False G1312865
TU1500894 other upstream 3769 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 3769 61865030 ~ 61891421 (-) False G1315519
TU1500893 other upstream 29623 61890884 ~ 61891421 (-) True G1315519
TU1500878 other upstream 31410 61892671 ~ 61973695 (-) False G1315518
TU1500860 other upstream 66907 61928168 ~ 61969268 (-) False G1315518

Expression Profile