RNA id: XR_002468721.2


Basic Information

Item Value
RNA id XR_002468721.2
length 2022
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110490558
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62058610 ~ 62062523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACACCTGCCTGCTATTTCCTGGGATTCTCACCAAAGGGAGAACACAACTTGTTTGAACTCGACAGGCCAGAGACTGAGTGAAGGGGAAGATGACTGAACACACAGCACCGTCTGTTTCTGTTGTACAGTAAACTCTGATATGTTGTCATGTGTACAAGTTGACTGCAGTAAAGGGAGAGGGCCAGTCCTGGACTTTGAAAAGAGGGCATAGCGCAGTTAAGACAAAACCACGTCCGTTATTCAGAGAGGCGTTCTACTACGCTCCCAGCGCAGAGACAGTGACCTTCCAAGAACCTTATAAAGAGGTCTTCCACCGACCGCCAAAACATCTATTCTAAGAACAATGGAAACCTGACGTATCCATTACAACCGACGTTATCAGGAGCCGCAGATAGAGCTAGAGCTACAACCATGAAAGACATTGTGACTTCTGGGGAAGTAACCAGAGATtctctgatgaactgactctccagcagacggaccgacaattccaacagagaagacaacaacgatgtcacgactcctaccgaaggtggcttcCCTTCGTGTTCGGGTGGcgcggcggtcgtcgtcaccggcctactagctgcctcTAACCTTTTCCCcccttgtctgtttattagttacacctgtGTTTAGTTAGATTGATTGGTTGGACTTTATTATCCAGCCGGCCCACCTGCTGGGTGTGCAGGATTGTTTGCAGTGTACTGTTGTGCACGACTGTATGTCACGGTTGTCCGTGTATGTGTTTTGCTCTACTGTTTAGTTCCCCGTGTTTTGGCGCATTTGTTTGGGTTGGCGTCGTTTTCACCGGTGTGGTGTAAAGTATGGCTACCCTGAACTTTctgtttcctgcgcctgactctttcctccactacaccccgggcatTACAAACGACATATGGGCGTAAATAtgttgattgcaattattcccgaatgagtgaaagttcatgtgcaaaggattagcatttcaatgaatATAATTATCCACTGTGTGTAGTGATCAATTTAGCCTTTGCCGCTCCTTTATCAGTCCACACCCCCTTTTCTTTGTATACCAAGCAGTCATATCGGTTTAGTCCACTTGGTGATCTTCCctatcattgttagtaaccaatatctactgtttgtttggtATGCATTTCtttgattatttagttagttagtaaatacatgattaagccaattggtgtatggatgattcatagtttAGGCTGGGTTTGGTCAGATAATTAAGAATTTACGACATTTggaaagaataattcattaatagaagactaattTAGTTATATttggaaaattataactttgtaatctgaagattttccgtgatgccccaacttcctagttaattcaattgacatgattagtttaatcacgtaataattagagaattgatttgataaaataacagtctgcACATTTAATGATAGCCAGAGACACGACACCAGTAGGCCAAGTAAATGTACCGTTAATCCTGTGTCATTTACattcatttctgttaatgcatgtatTAACCATAGTCAATTACCGTTCTCATTATGTTGTTTACGGTGTTGAGTTCACAACTATTGAATTTTTTGGGGTTAATTTCATAACAATTACAAGTTTTGTAAAATATTTGTTCATTGCCTTTTGTTTGGAGTGCAATGAGCATGTTCTCTGTCCTGATACAGTCGAGGGAGCGTGCGCCTGAGCACGCACAGAAGTCAACAGTTTACAGTGGCTTCCTCTCTCCTCGTTTTCTAGCCCTCATCTGCTCTTAGAAAAGATAACAGGATTGTATTGTAGGGGtgccatgtggctcagttggcagagcatggtgcttgcaacacaagggttgtgggtttgatacCCATGTGGGACCAGTACAAAAAAAGTAAGAAGAATGCCATAAAATGGACCAAACattttaatgtaaaaaaataatgtattcaCTAAGTGTATTCATTCAATTTGTCCAATGAGAAACACTGTTTTACAGTTTTTATAACTGTTACTGGTACCCACAGATATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1501506 lncRNA downstream 16060 62040640 ~ 62042550 (-) True G1316052
TU1500962 lncRNA downstream 23133 62035061 ~ 62035477 (-) True G1315582
TU1500959 lncRNA downstream 26453 62031945 ~ 62032157 (-) True G1315579
TU1500958 lncRNA downstream 27121 62031133 ~ 62031489 (-) True G1315578
TU1500889 lncRNA downstream 51903 61950379 ~ 62006707 (-) False G1315518
TU1501592 lncRNA upstream 68098 62130621 ~ 62132344 (-) True G1316122
TU1501617 lncRNA upstream 128641 62191164 ~ 62191587 (-) True G1316145
TU1501613 lncRNA upstream 159291 62221814 ~ 62224615 (-) True G1316142
TU1501652 lncRNA upstream 187670 62250193 ~ 62250404 (-) True G1316174
TU1501658 lncRNA upstream 194575 62257098 ~ 62264093 (-) True G1316178
XR_005036157.1 mRNA downstream 197349 61850367 ~ 61861261 (-) True LOC110490536
XR_002468714.2 mRNA downstream 197350 61850367 ~ 61861260 (-) False LOC110490536
XM_021563946.2 mRNA downstream 216521 61836836 ~ 61842089 (-) False LOC110490521
XM_036944908.1 mRNA downstream 216521 61836836 ~ 61842089 (-) False LOC110490521
XM_036944909.1 mRNA downstream 216521 61836836 ~ 61842089 (-) True LOC110490521
XR_002468722.2 mRNA upstream 18448 62080971 ~ 62083812 (-) True LOC110490561
XR_005036163.1 mRNA upstream 64015 62126538 ~ 62129743 (-) False LOC118938820
XR_005036162.1 mRNA upstream 64015 62126538 ~ 62130465 (-) False LOC118938820
XR_005036164.1 mRNA upstream 64015 62126538 ~ 62130465 (-) True LOC118938820
XR_005036166.1 mRNA upstream 66953 62129476 ~ 62129665 (-) True LOC118938821
TU1501505 other downstream 2587 62042770 ~ 62056023 (-) True G1316051
TU1500878 other downstream 84915 61892671 ~ 61973695 (-) False G1315518
TU1500848 other downstream 84915 61973177 ~ 61973695 (-) False G1315518
TU1500860 other downstream 89342 61928168 ~ 61969268 (-) False G1315518
TU1500896 other downstream 167189 61865030 ~ 61891421 (-) False G1315519
TU1501657 other upstream 194575 62257098 ~ 62264030 (-) False G1316178
TU1501819 other upstream 471765 62534288 ~ 62537470 (-) True G1316323
TU1501875 other upstream 693159 62755682 ~ 62767499 (-) True LOC110490571
TU1501967 other upstream 840336 62902859 ~ 62904682 (-) True G1316451
TU1502495 other upstream 1223984 63286507 ~ 63287904 (-) True G1316904

Expression Profile