RNA id: XR_002468722.2


Basic Information

Item Value
RNA id XR_002468722.2
length 1050
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110490561
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62080971 ~ 62083812 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCACATGGTCCAATTTTTAGCATGCAGGGACATTTTGCCCCTTATGATGCCCTCTAGTGGTTGTTGAGAGAAACACTCCTCAAGGATCTTCCTGGTGTAACTGCCATAGGCGTGGCTGTTGAAATGATGATTGTGGCAGTTACCTGAAAACAACAAGATTAAAGGACGCTGCTGGCGGCGTCTACTTTAATCTACAAAATAgGACGTGAGCAGAGGGACAGAACAGCTTAGGGACAGAAAACAAAATGGTGGAACACAGAAGAGAGCGACGCCGTGCCATTTCCCTCAGGGCTGGACCTAGTGAGGTGGACAATGTCACCCTGTCTGATGTGAATCTCAGGATCCATGCCTGGGCTGCCCGGACAACAGGTCGTCAGCTGGCAGAGATGGGTGACAGACTGGACCGTGAATGGGCAGAGAGACACCCTAATCAGTGGCCTGTGCCACAAACTCTCCATGTGACAAGTCCTGCCCATGCCCTGACTAGAAGCATCTACAGGGGGATACAAGGACAGCTTTGGGGAGTGAAGAGTTTGCCCGGCGTGGCCTCCGCTGTCCACAGGCAGGCTACACAGAGAGCAGAGGCTTGGGTTTCCAGTATTCAACCTGCTAACTGCCCTGGTTGGGCCAAAGCAATGCTTGCCACTGTGGCACTGGTGGCCACGGCAACCATTTGCACTGCATTGTGGAAGGAGTAGAAAGGCTAACCATTGCACTGAGGGGGGCCTTGGCTGGACTTCTAGCTACAATGTTCTGTGTTGGACAATTTCCTAATTGAGtgatatttttaaacattttttactaTAGACTTTAAGAAAAAAGAAATACCGTGTGTGTTATTGAATTGATTGTGCTGGATCACAGTTTTTATAGTCTTATCAACTAATGTATGTTTTAAATACTGTTGCTGGTCTGCAGTTTTTTCTATGAAGATTAAGCCTGTTACTGGTTAGACATTTAATTGCCACAACTATCTTACACCATTAAATGGACACTGGGaaatgattttttaatgacttgAGAAAAAATTTAACTTGAGAAAAACCAAA

Function

GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0043065 positive regulation of apoptotic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1501518 lncRNA downstream 18453 62060311 ~ 62062518 (-) True LOC110490558
TU1501506 lncRNA downstream 38421 62040640 ~ 62042550 (-) True G1316052
TU1500962 lncRNA downstream 45494 62035061 ~ 62035477 (-) True G1315582
TU1500959 lncRNA downstream 48814 62031945 ~ 62032157 (-) True G1315579
TU1500958 lncRNA downstream 49482 62031133 ~ 62031489 (-) True G1315578
TU1501592 lncRNA upstream 46809 62130621 ~ 62132344 (-) True G1316122
TU1501617 lncRNA upstream 107352 62191164 ~ 62191587 (-) True G1316145
TU1501613 lncRNA upstream 138002 62221814 ~ 62224615 (-) True G1316142
TU1501652 lncRNA upstream 166381 62250193 ~ 62250404 (-) True G1316174
TU1501658 lncRNA upstream 173286 62257098 ~ 62264093 (-) True G1316178
XR_002468721.2 mRNA downstream 18448 62058610 ~ 62062523 (-) False LOC110490558
XR_005036157.1 mRNA downstream 219710 61850367 ~ 61861261 (-) True LOC110490536
XR_002468714.2 mRNA downstream 219711 61850367 ~ 61861260 (-) False LOC110490536
XM_021563946.2 mRNA downstream 238882 61836836 ~ 61842089 (-) False LOC110490521
XR_005036163.1 mRNA upstream 42726 62126538 ~ 62129743 (-) False LOC118938820
XR_005036162.1 mRNA upstream 42726 62126538 ~ 62130465 (-) False LOC118938820
XR_005036164.1 mRNA upstream 42726 62126538 ~ 62130465 (-) True LOC118938820
XR_005036166.1 mRNA upstream 45664 62129476 ~ 62129665 (-) True LOC118938821
XM_021563988.2 mRNA upstream 81908 62165720 ~ 62169335 (-) True LOC110490564
TU1501505 other downstream 24948 62042770 ~ 62056023 (-) True G1316051
TU1500878 other downstream 107276 61892671 ~ 61973695 (-) False G1315518
TU1500848 other downstream 107276 61973177 ~ 61973695 (-) False G1315518
TU1500860 other downstream 111703 61928168 ~ 61969268 (-) False G1315518
TU1500893 other downstream 189550 61890884 ~ 61891421 (-) True G1315519
TU1501657 other upstream 173286 62257098 ~ 62264030 (-) False G1316178
TU1501819 other upstream 450476 62534288 ~ 62537470 (-) True G1316323
TU1501875 other upstream 671870 62755682 ~ 62767499 (-) True LOC110490571
TU1501967 other upstream 819047 62902859 ~ 62904682 (-) True G1316451
TU1502495 other upstream 1202695 63286507 ~ 63287904 (-) True G1316904

Expression Profile