RNA id: TCONS_00043884


Basic Information

Item Value
RNA id TCONS_00043884
length 785
lncRNA type retained_intron
GC content 0.39
exon number 4
gene id XLOC_022232
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16719743 ~ 16737161 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGAGCAAAAGTGGCCGGACCAGAATTGGCAAACTCATACCTTGGATTGTGTTCACCATGCCGCTTGGGGTCCTGTCATACATCATGCTATGGTATACCCCACAGGACACCATGTCCCCTGCCTTCAGTTTCAGCTGGTACTTCATATGGTGTTGTGTATTTGACACCTTTATAAGTTGCCACCATGTGCCATATTCTTCACTAAACATGTTTTTAGGAGGGGATGAAAAGGACCGAGACTCAGCCACTGCTTATAGAATGGGTGTGGAAGTGTTCGCCACACTGGCAGCTTCTGCCATTCAGGGGCAAATAGTCGGGGTTCACCACGCCAAGAGGACACACACCTGCAGCTTGCAGAATAACACAGAAGAGCTTTCTGGAAACTACACTGACAAGCTGACTGACATATCCGAAATAGCTCTACAAAACACTGTGAGAAAATGAATACCTCATTACTGTTGTCTCAAGCACATTAATCAGTTATCAGTTATAAGTTATTACTTTTCACTGTGAACTAAATGCAGCTGTTTGTCCTTACATTAATGATTTAGTGTAGTAGAATAAGATTATTCCTGGTGACTGTATATGCAGGGGCTAATTCTCAATAAATGTTGTGGTAGCATTGTAGCAAATGCACCCACTTAGGCTTCAAttatcatattgcaatatataatatataaataaattaaatattagcatcagcagtttttttttagcttattcCTAATTAATTTAGTTCAAATTATGAAAGGATGTTGCCATTTTTTTGCTGAATTATATTAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000135489

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044723 lncRNA downstream 21281 16693578 ~ 16709238 (-) False XLOC_022231
TCONS_00044979 lncRNA downstream 21389 16696124 ~ 16709130 (-) False XLOC_022231
TCONS_00044978 lncRNA downstream 82480 16644124 ~ 16648039 (-) True XLOC_022228
TCONS_00044722 lncRNA downstream 211673 16516982 ~ 16518846 (-) True XLOC_022226
TCONS_00044721 lncRNA downstream 244671 16483072 ~ 16485848 (-) True XLOC_022225
TCONS_00043885 lncRNA upstream 1982 16735911 ~ 16737152 (-) True XLOC_022232
TCONS_00044724 lncRNA upstream 116907 16850836 ~ 16852947 (-) True XLOC_022235
TCONS_00043892 lncRNA upstream 227340 16961269 ~ 16962540 (-) False XLOC_022237
TCONS_00043902 lncRNA upstream 620224 17354153 ~ 17355702 (-) True XLOC_022241
TCONS_00043904 lncRNA upstream 694042 17427971 ~ 17429764 (-) True XLOC_022242
TCONS_00043879 mRNA downstream 38207 16688420 ~ 16692312 (-) True XLOC_022230
TCONS_00043876 mRNA downstream 48333 16648621 ~ 16682186 (-) False XLOC_022229
TCONS_00043878 mRNA downstream 63879 16652084 ~ 16666640 (-) True XLOC_022229
TCONS_00043877 mRNA downstream 63936 16650002 ~ 16666583 (-) False XLOC_022229
TCONS_00043874 mRNA downstream 245329 16482869 ~ 16485190 (-) False XLOC_022225
TCONS_00043887 mRNA upstream 106643 16840572 ~ 16843649 (-) True XLOC_022234
TCONS_00043888 mRNA upstream 222256 16956185 ~ 16960972 (-) True XLOC_022236
TCONS_00043890 mRNA upstream 227340 16961269 ~ 16981980 (-) False XLOC_022237
TCONS_00043891 mRNA upstream 227649 16961578 ~ 16980213 (-) False XLOC_022237
TCONS_00043894 mRNA upstream 244982 16978911 ~ 16981899 (-) False XLOC_022237
TCONS_00043880 other downstream 21288 16696410 ~ 16709231 (-) False XLOC_022231
TCONS_00043881 other downstream 21355 16696519 ~ 16709164 (-) True XLOC_022231
TCONS_00043875 other downstream 168358 16561233 ~ 16562161 (-) True XLOC_022227
TCONS_00043872 other downstream 778543 15946154 ~ 15951976 (-) True XLOC_022224
TCONS_00043863 other downstream 1622557 15107848 ~ 15107962 (-) True XLOC_022217
TCONS_00043886 other upstream 10853 16744782 ~ 16746423 (-) True XLOC_022233
TCONS_00043889 other upstream 227340 16961269 ~ 16964105 (-) False XLOC_022237
TCONS_00043893 other upstream 244001 16977930 ~ 16978915 (-) False XLOC_022237
TCONS_00043898 other upstream 249848 16983777 ~ 16984594 (-) True XLOC_022237
TCONS_00043900 other upstream 310365 17044294 ~ 17046384 (-) True XLOC_022239

Expression Profile

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