RNA id: XR_005036162.1


Basic Information

Item Value
RNA id XR_005036162.1
length 1896
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC118938820
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62126538 ~ 62130465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTAGGTGTGGAACGTGTGCAGAGAGTCTAGTTGTGGGggaacagtaactatgatgtttagatgtggaacgtgtgcagagagtctagttgtgggggaacagtaactatgatgtttagatgtggaacgtgtgcagagagtcttgttgtgggggaacagtaactatgatgtttagatgtggaacGTGTGCAGAGAGTCTTGTTGTGGAggaacagtaactatgatgtttagatgtggaagTGGTGTGTGGAACGTGTGCAGAGAGTCTAGTTGTGGAggaacagtaactatgatgtttagatgtggaaTGTGTGAAGAGAGCCTTGTTGTGGAggaacagtaactatgatgtttagatgtggaagTGGTGTGTGGAACGTGTGCAGAGAGTCTAGTTGTGGAggaacagtaactatgatgtttagatgtggaagTGGTGTGTGGAACGTGTGAAGAGAGGCTTGTGTGGAggaacagtaactatgatgtttagatgtggaagTGGTGTGTGGAACGTGTGCAGAGAGTCTAGTTGTGGGggaacagtaactatgatgtttagatgtggaacgtgtgcagagagtctagttgtgggggaacagtaactatgatgtttagatgtggaacgtgtgcagagagtcttgttgtgggggaacagtaactatgatgttAAGGTGTGGAACGTGTGCAGAGAGTCTAGTTGTGGGggaacagtaactatgatgtttagatgtggaacGTGTGCAGAGAGTCTAGTTGTGGAGGAACAGTAGctatgatgtttagatgtggaacgtgtgcagagagtctagttgtgggggaacagtaactatgatgtttagatgtggaagTGGTGTGTGGAACGTGTGCAGAGAGTCTAGTTGTGGAggaacagtaactatgatgtttagatgtggaacGTGTGAAGAGAGCCTTGTGTGTGGAggaacagtaactatgatgtttagatgtggaagTGGTGTGTGGAACGTGTGCAGAGAGTCTTGTTGTGGAggaacagtaactatgatgtttagatgtggaacgtgtgcagagagtctagttgtgggggaacagtaactatgatgtttagatgtggaacgtgtgcagagagtcttgttgtgggggaacagtaactatgatgttAAGGTGTGGAACGTGTGCAGAGAGTCTAGTTGTGGGggaacagtaactatgatgtttagatgtggaacgtgtgcagagagtctagttgtgggggaacagtaactatgatgtttagatgtggaacgtgtgcagagagtcttgttgtgggggaacagtaactatgatgttAAGGTGTGGAACGTGTGCAGAGAGTCTAGTTGTGGGggaacagtaactatgatgtttagatgtggaacGTGTGCAGAGAGTCTAGTTGTGGAGGAACAGTAGctatgatgtttagatgtggaacgtgtgcagagagtctagttgtgggggaacagtaactatgatgtttagatgtggaacGTGTGCAGAGAGTCTAGTTGTGGAGGAACAGTAGctatgatgtttagatgtggaacgtgtgcagagagtctagttgtgggggaacagtaactatgatgtttagatgtggaagTGGTGTGTGGAACGTGTGCAGAGTCTTGTTGTGGGggaacagtaactatgatgtttagatgtggaacgtgtgcagagagtcttgttgtgggggaacagtaactatgatgtttagatgtggaagTGGTGTGTGGAACGTGTGCAGCAGTGGTAAGAGAGGATTGGAAGCTACATTCTTTCACTGGCCTTCTGACACGTTTATCTACTGCAACTTGAGAAATGTCCTCCCACTtcctgacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttacctGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1501518 lncRNA downstream 64020 62060311 ~ 62062518 (-) True LOC110490558
TU1501506 lncRNA downstream 83988 62040640 ~ 62042550 (-) True G1316052
TU1500962 lncRNA downstream 91061 62035061 ~ 62035477 (-) True G1315582
TU1500959 lncRNA downstream 94381 62031945 ~ 62032157 (-) True G1315579
TU1500958 lncRNA downstream 95049 62031133 ~ 62031489 (-) True G1315578
TU1501592 lncRNA upstream 156 62130621 ~ 62132344 (-) True G1316122
TU1501617 lncRNA upstream 60699 62191164 ~ 62191587 (-) True G1316145
TU1501613 lncRNA upstream 91349 62221814 ~ 62224615 (-) True G1316142
TU1501652 lncRNA upstream 119728 62250193 ~ 62250404 (-) True G1316174
TU1501658 lncRNA upstream 126633 62257098 ~ 62264093 (-) True G1316178
XR_002468722.2 mRNA downstream 42726 62080971 ~ 62083812 (-) True LOC110490561
XR_002468721.2 mRNA downstream 64015 62058610 ~ 62062523 (-) False LOC110490558
XR_005036157.1 mRNA downstream 265277 61850367 ~ 61861261 (-) True LOC110490536
XR_002468714.2 mRNA downstream 265278 61850367 ~ 61861260 (-) False LOC110490536
XM_036944909.1 mRNA downstream 284449 61836836 ~ 61842089 (-) True LOC110490521
XM_021563988.2 mRNA upstream 35255 62165720 ~ 62169335 (-) True LOC110490564
XM_036944935.1 mRNA upstream 505173 62635638 ~ 62712367 (-) False LOC110490568
XM_036944936.1 mRNA upstream 546594 62677059 ~ 62710484 (-) False LOC110490568
XM_021563997.2 mRNA upstream 598759 62729224 ~ 62740135 (-) True LOC110490570
XM_021564001.2 mRNA upstream 624491 62754956 ~ 62766800 (-) False LOC110490571
TU1501505 other downstream 70515 62042770 ~ 62056023 (-) True G1316051
TU1500878 other downstream 152843 61892671 ~ 61973695 (-) False G1315518
TU1500848 other downstream 152843 61973177 ~ 61973695 (-) False G1315518
TU1500860 other downstream 157270 61928168 ~ 61969268 (-) False G1315518
TU1500893 other downstream 235117 61890884 ~ 61891421 (-) True G1315519
TU1501657 other upstream 126633 62257098 ~ 62264030 (-) False G1316178
TU1501819 other upstream 403823 62534288 ~ 62537470 (-) True G1316323
TU1501875 other upstream 625217 62755682 ~ 62767499 (-) True LOC110490571
TU1501967 other upstream 772394 62902859 ~ 62904682 (-) True G1316451
TU1502495 other upstream 1156042 63286507 ~ 63287904 (-) True G1316904

Expression Profile