RNA id: TU1501870


Basic Information

Item Value
RNA id TU1501870
length 3946
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110490568
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62633205 ~ 62712367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTTGTCTCGTGTGTCTCAGCTGTGGAACGTGAAGGATGGTACTCTGCTTAAGATCTGTTCCCGTGACAACAAGGACGCCATGGACTCTCTGCATGGAGGCTGGGTGACCGACCTGCACTTCTCCCCAGACAACACTGTGCTGCTGTCTACAGGAGGATACATTAAGTGGTGGAACGTGGAGAAAGGAGAGGCCCTCCAGACCTTCTACCCGACAGGAGCCAATCTGAAAAGGATCCACGTGTCACCTGACTTCTCCACCTTCGTCACCATCGACAATATCGGAATCCTCTACATCCTGAAGAAGGTGGAATGAGGAGGCATAGCTCATTAGTCTAAAGTGGTTTCCTTATAGCTCATTAGTCTAAAGGGGGCGTAGCTCAATAATGGAAATAattctcgtctcctctccttgcaTTGATCTGAAAGAGCCAGACAGGTGAGAGCCAATGTCTGTTAGTCATCTGCCATGTTGCTTTAGCCTGCGTTCTCAGATTAGAGTAGGAGATCTGCTAAAGGACAATCATTTCTCCTGCTCTGCCTTCTGCATGCCATAACAGTCAAACAATCACATTAAATACATCATTTCTCCTGCTCTGCCTTCTGCATGCCATAACAGTCAAACAATCACATTAAATACATCATTTCTCCTGCTCTGCCTTCTGCATGCCACAACAGTCAAACAATCACATTAAATACATAATTTCTCCTGCTCTGCCTTCTGCATGCCATAACAGTCAAACAATCACATTAAATACATAATTTCTCCTGCTCTGCCTTCTGCATGCCACAACAGTCAAACAATCACATTAAATACATAATTTCTCCTGCTCTGCCTTCTGCATGCCACAACAGTCAAACAATCACATTAAATACATAATTTCTCCTGCTCTGCCTTCTGCATGCCATAACAGTCAAACAATCACATTAAATACATAATTTCTCCTGCTCTGCCTTCTGCATGCCATAACAGTCAAACAATCACATTAAATACATAATTTCTCCTGCTCTGCCTTCTGCATGCCACAACAGTCAAACAATCACATTAAATACATCATTTCTCCTGCTCTGCCTTCTGCATGCCACAACAGTCAAACAATCACAACAAAATACATCATTTCTCCTGCTCTGCCTTCTGCATGCCACAACAGTCAAACAATCACATTAAATACATCATTTCTCCTGCTCTGCCTTCTGCATGCCACAACAGTCAAACAATCACATTAAATACATCATTTCTCCTGCTCTGCCTTCTGCATGCCACAACAGTCAAACAATCAGAACAAAATACATCATTTCTCCTGCTCTGCCTTCTGCATGCCACAACAGTCAAACAATCACATTAAATACATCATTTCTCCTGCTCTGCCTTCTGCATGCCATAACAGTCAAACAATCACATTAAATACATCATTTCTCCTGCTCTGCCTTCAGCATGCCATAACAGTCAAACAATCACATTAAATACATCATTTCTCCTGCTCTGCCTTCTGCATGCCATAACAGTCAAACAATCACATTAAATACATCATTTCTCCTGCTCTGCCTTCTGCATGCCATAACAGTCAAACAATCACAACAAAATACATAATTTCTCCTGCTCTGCCTTCTGCATGCCAtaacagtcaaaacaatcagaacAAAATTGATATCCTGACAAAATGAACTATTCTGCTTTTCTTATTGTATCAGGGgaccatatttttttttatttcacctttatttaaccaggtaggctagttgagaacaagttctcatttgcaactgtgatctggccaagataaagcatagcagtgtgaacagaaaacacagagttacacatggagtaaacaattaacaagtcaataacacagtagaaaaaaggggagtctatatatacattgtgtgcaaaaggcatgagaaggtaggcaaataattacaattatgcagattaacactggagtgataaatgatcagatggttatgtacaggtagagatattggtgtgcaaaagagcagaaaaataaataaataaaaacagtatggggatgaggtaggtgaaaatgggtgggctatttaccaatagtctatgtacagctgcagcgatcggttagttgctcagatagcagatgtttgaagttggtgagggagataaaagtctccaacttcagcgagttttgcaattcgttccagtcatagacaaaaagcatttgattcttaCTGCACTGGGGTAAATTGCATGCAATGGACAGATTTTTCTATGCTCTTTTTAACTAGGAAAATCTATGCTATAATGAAATGCACCAGCATTATCTGTTGTGATTCTACAGGGATGTTGTCAAACACAGTGAATTGGTTTTGTATTTCTAAGTGCCCAATTAGTCTTTGGCTTTGCTGATGTCGTGGCACTCTGCAAATGGTCATGATTGTGTTCTGTCGTCTTAAACAAAGTGCATGTATTTTTCCCTGTGAAGTTCGGGCGGCAGGGACACTAGcgattaagagcgttgggccagtaacctaaaggttgctggttcgaatctctGAGCCGACTGGGTGAAAAATCTCTCTATGCCCTTCAGCAacgcacttaaccctaatttgctcttgtaagtcgctctgggtaagagcgtctgttgactaaaatgtaaaaatgtagcgGTCTAAACCTGTGTATTTGGACTAACTAAAGCCTTAAAGGTGGAGTCCGCAGTATGGGGAAGCCTACCCActactgtttttgttgttgttgtccggGCTGAGGAGCGTCACACAGCATGGTAAAACTAATAGCAGGACATATTGTGCTCTTCTATCGCGCTTGCACTGATGTCTGAGGGGGAGAACTGTTGGTCGTTTccagtaacttctttgttgttgtaatatcacaAACGGAAGTGGCTGTTTCACcactaaggattccagctttaatgtTTTTAAGGGGACATATACTAAGGAAAATGTGGGAAAGCTAAGGAAAGATCCAAATGATAGGGATCTTTGCCTCAACCAGCTCAGTCTCACGTCAGatttagacgttcatccatgtttctcaaacgtccaTTTTGAAATTGTTTAAGGTTAAGTCCAGGCATTAACTCCATATTCttaagtttaggtattaactgaattgttaaggtaagggataaggtttggGTTAGGCTTAACTTTCCATTGCTgtattcgaacttgcaacctttggaatcagagggaGATGCTTCCCCCCATccgccatccctgtccacaacgccctagcaaatCTGAAACTTTATTGagggtaacagcgctcactgttttTCTAGAGCAAATGAGTAATTCAAACCTTGACCAAAGGCATTTGTCAGAATAGCATCTGTCGACTATGTTTACTATCAAGTTCAATACTGTTTAGGACATTTTCTACACTAATTATATCGATTGAGCCTGTTTTTTTTTGTACAAGTCCTTTTTTATTGTATATATCTTGCTTTCATACATTTAGTTTTCTTATTACTACTGATCCACACTCTAGTGAGCTTTGTAAAAAGGCACTATAATTTTTCTCTTGTGGTCTGTATCAAGAACATGGCCTTGTTCCAATACTTTGACaatgcatccttccttccttgcttccttccttccatcaTTGCTTGACTTCATCTCTGATCTGACTCTATTGAATAGCTGACCGATTGCTTCCACTTCATGGCTGACAATCCAGAGTCATTTCAAATCTGTGATTATTGAAGGGAAGGATGTGTTTTCGAAGTATTCAATCTGGGCCTTGTTTTTGATGTCAGAACATGTGCTCTTACCTATTGGTGCTTTAAACTCAGTGTGCAAGTAAATCATCAGAGGAGGTCTCTCCCTGTCAATCAAATCTGTGAAGTCACGAGGTGATCTCAGGACATGAATACTGTTATGGTAAAGTgcttgtgtgtggtgtgtaattTATAATACCTTAGAGAATAAAACATTCTATGACAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1501803 lncRNA downstream 28097 62587042 ~ 62605108 (-) False G1316310
TU1501802 lncRNA downstream 43625 62588391 ~ 62589580 (-) True G1316310
TU1501835 lncRNA downstream 70416 62557286 ~ 62562789 (-) True G1316332
TU1501826 lncRNA downstream 82187 62546863 ~ 62551018 (-) True G1316330
TU1501763 lncRNA downstream 147806 62469883 ~ 62485399 (-) True G1316276
TU1501921 lncRNA upstream 76370 62745602 ~ 62746507 (-) True G1316409
TU1501926 lncRNA upstream 82457 62751689 ~ 62752024 (-) True G1316414
TU1501943 lncRNA upstream 108917 62778149 ~ 62778350 (-) True G1316431
TU1501946 lncRNA upstream 111912 62781144 ~ 62781591 (-) True G1316434
TU1501947 lncRNA upstream 112495 62781727 ~ 62782221 (-) True G1316435
XM_021563988.2 mRNA downstream 463870 62165720 ~ 62169335 (-) True LOC110490564
XR_005036162.1 mRNA downstream 502740 62126538 ~ 62130465 (-) False LOC118938820
XR_005036164.1 mRNA downstream 502740 62126538 ~ 62130465 (-) True LOC118938820
XR_005036163.1 mRNA downstream 503462 62126538 ~ 62129743 (-) False LOC118938820
XM_036944936.1 mRNA upstream 7827 62677059 ~ 62710484 (-) False LOC110490568
XM_021563997.2 mRNA upstream 59992 62729224 ~ 62740135 (-) True LOC110490570
XM_021564001.2 mRNA upstream 85724 62754956 ~ 62766800 (-) False LOC110490571
LOC110490778 mRNA upstream 105464 62774696 ~ 62776771 (-) True LOC110490778
XR_005036171.1 mRNA upstream 150854 62820086 ~ 62821153 (-) True LOC118938823
TU1501819 other downstream 95735 62534288 ~ 62537470 (-) True G1316323
TU1501657 other downstream 369175 62257098 ~ 62264030 (-) False G1316178
TU1501505 other downstream 577182 62042770 ~ 62056023 (-) True G1316051
TU1500848 other downstream 659510 61973177 ~ 61973695 (-) False G1315518
TU1500860 other downstream 663937 61928168 ~ 61969268 (-) False G1315518
TU1501875 other upstream 86450 62755682 ~ 62767499 (-) True LOC110490571
TU1501967 other upstream 233627 62902859 ~ 62904682 (-) True G1316451
TU1502495 other upstream 617275 63286507 ~ 63287904 (-) True G1316904
TU1503924 other upstream 1413805 64083037 ~ 64083888 (-) True G1318092
TU1504007 other upstream 1547272 64216504 ~ 64227675 (-) True G1318164

Expression Profile