RNA id: TU1501875


Basic Information

Item Value
RNA id TU1501875
length 1719
RNA type TUCP
GC content 0.44
exon number 2
gene id LOC110490571
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62754956 ~ 62767499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gTTATATCAGGTTAAGATCTCATCAAACCAGTTTTAACCATACGGTTATGACCATGGCGTTGATGGTGTGTCTAGCTTTAGGCAGGTTCACAATCCAATGTAAAATTAGCATAGGTTGTTTTTCAAATGGAAAGTGAACTAGAAAGTCACTTCGATATGTCCATACAACTGGCATAGAAATGATAGAAATGATATACAACTcgaaatgataaacttggaataCAACAGGGGTAATAACTTACAGTACAACAAATAACAGCAGAGTAAGACACACTACATGAAAGATACTGTTCCGGACCAAAGAAGTTAAAGTTGTAATGATGCTGGCACAAAACTGTTGAGGGCTCTATTTGTCAGGTAAAATCACCTGTTGATGGTGTTGATGCAAACACTACGTACTGTAGGCTACTCATTGTCGGGGTGTGGACCAACCATTTAACTGCTCCCTCTTGTATTATATACATAGTCTCTGACAGCTTTCAACGATAACAAAAAATGATTAGAAATCATTAGAGAGAATAGACTATGCTCCAAGTTCACTTTTGAATGTGGAGTTAGGTCTAAATAACTATGATAAAAGTAGACTCATACTTTGATAAACTTCCTGCCTGCATCAGACAACCAGGTGAAGAGGAAACGTAAATATCAGCCACACCTTTTTACCTAACCTGCCTGTCTCCGAGAGTAGCTCGGCGCAAGGCGTTTGGCTGCGTCACTCAGTCAACTCACTGATCTCTACACCTGGATGGTATACGTAGACAGTGTGATACAATACTTCATCTTCTCCTGGCATTGTGGATACCAAGGGTCAAGGTATGTCCACTCCGGCTTCCAAGGGGGTTCTACGGCCTGTTCTGATTGGCTGTTTTTTTATGGCGGGCTTCGTGGGAATATTCTTAATTTACTACAAACCCCAGATCAAGTTCCTTTCATGCCCTACTGACCAGGCATCCCACGAGGGGAAGGCTGGTTGTTCTCCTTGCCCTCAAGTAAGTATGGCAGGGAACCACACAGGGCAAAAAACACACCATGCACAGACAGCCATTCAGGCCGATGATGACGGAGACACAGACACTATCATTTTGATCTGGATGTGGCCATTTGGTCAGGCCTTTGACATAGACTCTTGTGTCTACTTTAACATCAAAGGCTGTCACCTAACAGTGGATAAAAACCTTTACAGCAAGGCGCACGGTGTCATATTCCACCATAGAGACATCCATGGAGACCTGAAGAACATGCCCCAAGAGCAACGTCCATGGTTCCAGAAATGGGTGTGGTGGAATGCAGAATCACCGGCTAACACAAACAGGATCCCTGGTGTTGACCACTTGTTCAATTTGACTGCCAGTTATCGACTGGATTCTGATATCAAGGTTCCTTATGGGTCGCTTGTTGAGGTAACCAGTGAGGATAAAATCTTTGAGCTGCCCAAGAAGGACAAATTAGTCTGCTGGGTAGTGAGCAACTGGAACCCAAACTACAAGAGGGTACAGGTGTTCAACGAGCTCAGTAGGCATGTCAAAGTAGAGGCCTATGGGAGACATTTTAGTAGATACCTTGAAAACCAAGACTACTCAAAGACGCTGTCCAGCTGTAAATTCTACCTGGCATTTGAAAACTCCCTCTACAAAGACTATGCTACAGAGAAGCTGTTCAACGCTATGAAGTTGGGAGCAGTGCCCATTGTTCTAGGTCCATCCAGGGACAACTACGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1501926 lncRNA downstream 3658 62751689 ~ 62752024 (-) True G1316414
TU1501921 lncRNA downstream 9175 62745602 ~ 62746507 (-) True G1316409
TU1501870 lncRNA downstream 86450 62633205 ~ 62669232 (-) True LOC110490568
TU1501803 lncRNA downstream 150574 62587042 ~ 62605108 (-) False G1316310
TU1501802 lncRNA downstream 166102 62588391 ~ 62589580 (-) True G1316310
TU1501943 lncRNA upstream 10650 62778149 ~ 62778350 (-) True G1316431
TU1501946 lncRNA upstream 13645 62781144 ~ 62781591 (-) True G1316434
TU1501947 lncRNA upstream 14228 62781727 ~ 62782221 (-) True G1316435
TU1501948 lncRNA upstream 15252 62782751 ~ 62783033 (-) True G1316436
TU1501954 lncRNA upstream 24107 62791606 ~ 62791723 (-) True G1316442
XM_021563997.2 mRNA downstream 15547 62729224 ~ 62740135 (-) True LOC110490570
XM_036944935.1 mRNA downstream 43315 62635638 ~ 62712367 (-) False LOC110490568
XM_036944936.1 mRNA downstream 45198 62677059 ~ 62710484 (-) False LOC110490568
XM_021563988.2 mRNA downstream 586347 62165720 ~ 62169335 (-) True LOC110490564
XR_005036162.1 mRNA downstream 625217 62126538 ~ 62130465 (-) False LOC118938820
LOC110490778 mRNA upstream 7197 62774696 ~ 62776771 (-) True LOC110490778
XR_005036171.1 mRNA upstream 52587 62820086 ~ 62821153 (-) True LOC118938823
XM_036944941.1 mRNA upstream 53756 62821255 ~ 62841674 (-) False si:ch211-244b2.4
XM_036944942.1 mRNA upstream 53756 62821255 ~ 62841674 (-) True si:ch211-244b2.4
XM_036944943.1 mRNA upstream 82641 62850140 ~ 62872394 (-) False LOC110490574
TU1501819 other downstream 218212 62534288 ~ 62537470 (-) True G1316323
TU1501657 other downstream 491652 62257098 ~ 62264030 (-) False G1316178
TU1501505 other downstream 699659 62042770 ~ 62056023 (-) True G1316051
TU1500878 other downstream 781987 61892671 ~ 61973695 (-) False G1315518
TU1501967 other upstream 135360 62902859 ~ 62904682 (-) True G1316451
TU1502495 other upstream 519008 63286507 ~ 63287904 (-) True G1316904
TU1503924 other upstream 1315538 64083037 ~ 64083888 (-) True G1318092
TU1504007 other upstream 1449005 64216504 ~ 64227675 (-) True G1318164
TU1504148 other upstream 1715328 64482827 ~ 64485318 (-) False LOC110499867

Expression Profile