RNA id: XM_021564288.2


Basic Information

Item Value
RNA id XM_021564288.2
length 3574
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC110490858
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62981171 ~ 62985780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtcatactaTTTGGGGGTCCTCATTCCTAGAGGACTGCTTGGTTCAGCAGCGTTTCTCCTTGCATTGAGAGAGTTTGGTATGACTCCCACAGGACAACATACACAGATGCATGATATTGGCTCTGACGTCTAAGGGCACAGCAGATAGAAGACCATGGAAGAACTCACTCTGCTACTCTGGCTCCTGATAGTTCCTCTTCAATCATTTGTACTTCAGCCCAGAGTGGAAATGATCCTCATAGAAGACTCGGTCAGAGAAACAGATCCCTGGTCAGACTGGAGACCTGAGAGATTGAGGGAGACCACAACAGCAGACGAAGAGGAGGGTGAAGAACTCACTGCAACCCACCctgaagaggggagggaggaagaggggaggagcgAGGAAGGACTAACTCTAGAGACGGATTCTGAGAAgtggagaatagaggaggagaaggaggcagCAGAGCAGGAGGGCCATGAGGAAGagcgagggatggaggaagagagaaagctgGTTGGAGGGCTTGattacagagagaagaagagatttgAAAATGGGGAGATAGAAGCTGATGAGGAACATGAAgacgaggaggagagaagagataatggagaggggagacatGAAGAAGGGATTAGATCAgatgatgaggagagaggtgttaaGGAAAAGAGAGcatatggaggagaggagaaactaGAAGAAGACCGGAGAGTTGGGGAAGTTAAAGAACCCAGTGTAGATCAAGGCGAGAGAGACTACTTAGTTGTTACACACATAGACCTCCCCCCTCCAACCAGcacttcctcctctcctgtagaaAAAGTAACAGACACTCAACCTGTCAATCAAGCTATCAACAAACCCATGTCCCCTCCCCCTGCAGCTATGCCTGTTCTACTTTATGATGTCACTCCTCCACCTGCCACTCATCATGACCCTCCCCCAGTTACACCTGCTACCTCCTCTCAAGTTCCAGAGTCTGCCACTCATGCTCTCGCTCAACCTGCCAGTCATATCCAAGACCCGGCTCCAGAGGCAGAGGAGGCCATCTCATTGGCGGACAGTGAGCTCATTATGGTTCAGAGTGTGACTGACAGCTCCCAGACCAACCGCAGTGAGTGGGAGAGTTTTGTTTTGCAGGCAATGGAGGTCAAAGTTGGCCCAATTGTCAAGGTTTCAGTCAATGACAATCAGACTGAGAGGAACAGCATTGTCTTTCTCAAAGAGACAGAAAATACATTCAAGCAGCTAAAGTCTACAGACAAACCAAAACAAGCAAAACCCACAGCCAAGGAACTGCAACCTACAGCCAAACCAAAAGAGATGACAAAACCAACAGCCAAACCCAAATTGACGGTACAGACAAACTCCACACCCAAAACACAACAGACAAACCATACACCCAAAACACAACAGGCAAAACCCACAGCCAAGGAACTGCAACCTACAGCCAAACCAAAAGAGATGACAAAACCAACAGTGACAGTACAGACAAACCCTACACCCAAAACACTAGACTCAAAGCCTATAcccaaaacactacacacaaactcCAGACCAAAAACACAACAGACAAACCATACACCCAAAACACAACAGACAAAACCTACACCCGAAACACAACTGACAAAGCCTACACCTGAAACACAACTGACAAAGCCTACACCTGAAACACAACTGACAAAACTTACACCCAGAACACAACAGACAAAACCTTCACCCAAAACACAACAGACAAAACCTACAGCCAAACTAGCAGTGCCAAAACACACAATGAAGCTGACACAGACTACCAAGAGTATCAAGACAAAGACAGTGAAACATCAAAAGAAAGACAAAATAAATGAGAGGAAAGGTAAACCTCTGAAAAAGGACAACAAAACCAAAGAGACAAAACAGGAAAAGAAGGAGGGCACAAATCCGGCATACTTCCCCTACTTCAAAGACAGCTACTGTCCACCGGAGTGTGCCTGCTATGGACGAGTGGTCCAGTGTTCCGACAAGGGGGTGGAGAAGGTTCCGTACGGCATCCCTTATAACTCCCGCTACATCCTCCTGATGAACAACCGCATCGACAGCATTCAGCTGGACCTGCTCAATGAGTACCTGTCCATGGAGTTCCTGGTGCTCAGCAACAACCGGCTGACAGACGGCTCCATCGAGGGGGCCTTCGAGGGCATCCCAGCCCTGAGGCGGCTCTACCTGGACCGGAACCTACTGGAGAGCGTGCCCACAGACCTGCCCGCCTCCCTGGAAGAGCTACGTCTGGATAACAACCAGCTGAACGTGATGTCGGAGGGAGCCTGGGCCCACTGCCCTGGCCTGCTGGTCCTCAGCCTCAGCAACAACAGCCTGGGGAATGGGAACGATACTCTCCCCGCCAGTGTGCTCTCACCTCTGGGCAGCCTGCGCACCCTCAGCCTGGACCGCAACCGGCTGGCCTCGGTGCCTCTGGGCTTACCGCTATCTATCAGGGAGTTGTACCTCCGTGGCAACCTTATCCAGAAGTTCCCAGGGGAGGCCTTCATGGGCACCTCAGAGCTGGTGATTCTGGATTTGAGCGCTAACCGGCTAACCAACCATGGCCTGCTCAGGGAGTCCCTCGTCAACGCCACCCACCTGGAGAGCCTCAACTTAGAGGGCAACCAGCTCAAGAAGGTACCCCGccatctcccctcttccctcaaAACCCTCAACCTGGAGGGCAACCTCATCTCCTCCGTGGGCAAAgcctccttcctccacctcccccaccTGGAGCACCTGGGCCTGGCCAGTAACAAGATAGCCAGGGTGGCCTCGGGGGCTTTCAGGGCGCTGCCTGTTCTGCACCAACTGGACCTGTGTCACAACGCCCTGAGCCAGGTGCCCAGGCAGCTGCCCCGGGGGCTACACACAACAAGATCCACTCAGTGCCCCGCGACGCCTTCTGCTGGGGGGGTTCAGACCCCGGCCTCAGCAGCCTGGTGCTGGTGCAGCTGGAGCACAACCTCATAGACCTGGGCCACCTGGACGCAAAAGCCTTCCACTGCCTCAGAGGCTTCCAGGTGGTACACTTCTACTGAGCTGCAGTCTATAGAATCCTGCAGGACAGTCAAACTGCAAGTATAGATTATAAACAATCCCACAACTGAAACCAATTGCTGTGTTTTTTCTGTTCAACCTGAAAGTCCGTTGGGCTCTAAAATGGCGGTAAAATGTTCTGCaatacacagagaaacaaacatcATGTCGGGAGCTGATTTTGATTCAACATTACAAGATAACAATGCAAGATGGCCAGTTGAGTGAACTTGGATCTCAATGTGGAtagctatactgtactgtatgccgTCGCTTGGGTAAAGCTGTGATTGATGGAAGCCATGGTGTTCAGAGAAAATACTTACTGGAACCGCTTCCATGAAGTCTGTGTTGAAAGACTATGGCCTACTTAAAGGTCAATGATgccacgtacagttgaagtcaaaagaaTGTGaaatcagaataatagtagagataattatttatttcagcttttatttctttcatcacattcccagtggatcagaagtttacatacagcacactcaattag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1502035 lncRNA downstream 27180 62953665 ~ 62953991 (-) True G1316516
TU1502034 lncRNA downstream 27828 62953080 ~ 62953343 (-) True G1316515
TU1502030 lncRNA downstream 30262 62950641 ~ 62950909 (-) True G1316511
TU1502028 lncRNA downstream 36609 62944165 ~ 62944562 (-) True G1316509
TU1502023 lncRNA downstream 41311 62939648 ~ 62939860 (-) True G1316504
TU1502386 lncRNA upstream 88023 63073803 ~ 63074108 (-) True G1316815
TU1502387 lncRNA upstream 90773 63076553 ~ 63076799 (-) True G1316816
TU1502394 lncRNA upstream 98278 63084058 ~ 63084291 (-) True G1316823
TU1502400 lncRNA upstream 106816 63092596 ~ 63092920 (-) True G1316829
TU1502402 lncRNA upstream 111134 63096914 ~ 63097373 (-) True G1316831
XM_036944945.1 mRNA downstream 48583 62905964 ~ 62932588 (-) True LOC118936239
XM_021562199.2 mRNA downstream 48589 62905964 ~ 62932582 (-) False LOC118936239
XM_021564008.2 mRNA downstream 90251 62886728 ~ 62890920 (-) True LOC110490577
XM_021564007.2 mRNA downstream 90280 62886728 ~ 62890891 (-) False LOC110490577
XM_036944944.1 mRNA downstream 98568 62875090 ~ 62882603 (-) True LOC110490576
XM_021564010.2 mRNA upstream 145570 63131350 ~ 63136329 (-) True LOC110490579
XM_021564011.2 mRNA upstream 247994 63233774 ~ 63252696 (-) False LOC110490580
XM_021564014.2 mRNA upstream 247994 63233774 ~ 63253906 (-) False LOC110490580
XM_021564013.2 mRNA upstream 247994 63233774 ~ 63254079 (-) True LOC110490580
XM_036944947.1 mRNA upstream 270658 63256438 ~ 63282396 (-) True LOC110490779
TU1501967 other downstream 76489 62902859 ~ 62904682 (-) True G1316451
TU1501875 other downstream 213672 62755682 ~ 62767499 (-) True LOC110490571
TU1501819 other downstream 443701 62534288 ~ 62537470 (-) True G1316323
TU1501657 other downstream 717141 62257098 ~ 62264030 (-) False G1316178
TU1501505 other downstream 925148 62042770 ~ 62056023 (-) True G1316051
TU1502495 other upstream 300727 63286507 ~ 63287904 (-) True G1316904
TU1503924 other upstream 1097257 64083037 ~ 64083888 (-) True G1318092
TU1504007 other upstream 1230724 64216504 ~ 64227675 (-) True G1318164
TU1504148 other upstream 1497047 64482827 ~ 64485318 (-) False LOC110499867
TU1504423 other upstream 2082497 65068277 ~ 65151400 (-) False G1318477

Expression Profile