RNA id: TU1504148


Basic Information

Item Value
RNA id TU1504148
length 2492
RNA type TUCP
GC content 0.38
exon number 1
gene id LOC110499867
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 64481916 ~ 64636502 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTAAAAGAGATCCCCGTTGATTTGTATTCAACACTGCCAGAAACAGTGCTGCCCTTCGCAACAGTCCCGTTGTGTTTGTCAcaaagttatttatttatttctaaaCCTTTTGCAGTGGCTTGTTACTCAGTATTgaaatgtgtgtttgttttgttcaagttGCAATAAGTTGTTTAATAGGAAGTCAGAAATcagaatgttttttattttacacTGGGGTGCTGTTGGCATTATTCTGTTCGTTTCAACTCCCATTTAAAAGTAGCAACACATTTACATTCACGCTGCTGTCCTTGTATAGATGTGGTGTACAACGATCATATTCATTCACATACATGTGGTCACATATGAACCCTTTTGCCCCCACTTACTATCTCCTGTTTGAAGTGATTGATCCCTTTCTGTTTGCGGTCAACCACTTCTCCCTCAACCTTGACCACAAATGGTCAATGTCGGGTCCTACCATCTTGGTATCTGGTCCCTCTGAACTAACCATCATTGCCAAAGAGCAATTGACCAATCAGGGCACCCCGGCTGGCCTCTAGTGCACTCATTGGTCTAATCTCTAGTGCCATGTTGATTCTTAGTCAGACAAACCCTTTAGCTTTATTTATTTGACTGTGTGGCTACTGACCTGAAGGAAACTTGATGTGTTTGGTATTTATTTGAATATAtaagtttgtttttgttttttattagGATGAAGGGCATAGCTGCATGCTAGTGTGTAATGTTGGCTTTAATGCCATTATTTTTTGATTGATTTCAATGCGTCAATGCAATGGATATAAAATGAAGAGAAAGAGTAGGAGGGATGTAGGAAATGTAGACTTGGTACATGACAGTTTATTTGTGCTTGCTCATGTCTCACTTCTTGATTTAAGTATCGTTGAATACGTGACTTGCAACTTCAAGGATCTGTCTTTCTCACAATGTTCTGCCCGCTATTGAAGAGAACATTTCCCCAAATCAAAAACCATTGCACCTCGTTGCAAAGTGAATTTCCCCCTCAAAACGTAAATTGCTTTAAGACCTATTGGAAATGTCTATCAATACACTCCAATCTAAATTCATTCATATCAGTGTGGATATCAGTCCTGTTGTACTTTCTTAGTTTTTGTGTGCCTTGTGGTTCTGGTACTTTAATAACTTTATGAATTAGAGATTCAAGACAGATTGACAATAGGATACTGTCTTTCTGAGTGTACTATACTATGGTATACACCTGCTAACTCATTTCCCCACAAGaacagctaccaacatactacaTGAGAAATAACAGAAATGTGCCTCGTTTTATTCAGGACCAAATCTGGACCCGTCAATCATCCTGGCCAAACGATGCAGTGGAATAACTTTGAGTGAAAGAGACATAAGGTTAAGTTTCTTTATTCAGCGTTGTGGAAAAACGGTTTTATTATCATGTCAGAATATCAACAATTCCTCTCTAAATGGATTGTATTCGTTTAATTTTTGAACATGGTTCACAAGAGGGACATGGTAGACATGCTGtgctttaaaaaaacatttgtttcttTGTGATGCAATTCAGCTTGTTCGACTGGGACGTGATCTGATGGTCGATTTAGTGTCACTGATCTGTTGTAGAGAAAATATAGAGGAGTTCCTGGCACTGAATTGACCTCTTAAGCACTAAACAAGATCATTTCAGACAATCGATTCGATAACAATTGACAATCATAGTTTCCGATAACTTGCTTAAGACTAGTATTAGTAATACTTCATTGAATTAATTGCTGTAGATGAAAATGCAAACAACTGCCAAAACAGGGACTTTAAAGGAGCCTTGGGGTAATGTCAGAAACATTCACGCATTGTTTCCTTTGAAAACAGAGGCATATGGACTCAGGAAACCACATAGTCTATTCAGTGTAGAGTTGGGAAACTACATGATTACGCTGTGTGGTCTCTAGTGCCATTCAAATACTTCTCCCACACCTCATTATCATTGCTTAAATTATAATTACAAAGCGTTCTTACGTCAACCAGAATAAAATCCATCTGGACTTTTTCCATTTCTCTGAAACACTGAAGAGGAAGGGGACTTTTGTTATGATCCCAGTCTTAAGCTATGATTATTTGCCAATATGTTATGTGGCGAAACTCGAGTACCATCACCAAAGGCGGACTGCTGTCATGTCCGAAACTATACGAGTGGTCTGAGGTGACATTTAGGGTCCCGTATTGGTTGTTTCAATGTTCTGTGGGGAAACTAACTAACATCCTGTATTTAAGACCCTCAATATCTAAGAACATTCAAGAATATCAAGTGCCATAggactctctttctctgtttaccGGGAAACCTATTACTAACGTTTATGCAACGTTTAGGATTGAATAAGTGCAAATCTCATCTATTTTCCCTGTGTTGCATGATAATGCCATGATACTGTATCAGTGGCAGGCAATGAGATAAAGTACCCTCTTTCTTCTCCTGCTTTGGTGTGTATTGTTGGGATGGGAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1504143 lncRNA downstream 12556 64470063 ~ 64470271 (-) True G1318285
TU1504139 lncRNA downstream 19759 64462865 ~ 64463068 (-) True G1318281
TU1504132 lncRNA downstream 38816 64443741 ~ 64444011 (-) True G1318274
TU1504131 lncRNA downstream 39686 64442928 ~ 64443141 (-) True G1318273
TU1504129 lncRNA downstream 44248 64438224 ~ 64438579 (-) True G1318271
TU1504153 lncRNA upstream 14008 64499326 ~ 64499622 (-) True G1318293
TU1504154 lncRNA upstream 14840 64500158 ~ 64500547 (-) True G1318294
TU1504179 lncRNA upstream 77061 64562379 ~ 64563352 (-) True G1318317
TU1504181 lncRNA upstream 79327 64564645 ~ 64565000 (-) True G1318318
TU1504208 lncRNA upstream 126912 64612230 ~ 64613051 (-) True G1318343
XM_036944951.1 mRNA downstream 25697 64412045 ~ 64457130 (-) False hgfa
XM_036944950.1 mRNA downstream 94858 64018813 ~ 64387969 (-) True LOC110490780
XR_005036322.1 mRNA downstream 939710 63542691 ~ 63543117 (-) True LOC118938928
XM_021564028.1 mRNA downstream 1045290 63436440 ~ 63437537 (-) True lepb
XM_021564015.2 mRNA downstream 1116145 63327987 ~ 63366682 (-) False prrt4
XM_021595640.2 mRNA upstream 220779 64706097 ~ 64709084 (-) True LOC110517721
XR_005036190.1 mRNA upstream 457100 64942418 ~ 64944906 (-) False LOC110513474
XR_005036189.1 mRNA upstream 457100 64942418 ~ 64945535 (-) False LOC110513474
XR_005036188.1 mRNA upstream 457100 64942418 ~ 64946166 (-) True LOC110513474
XR_005036177.1 mRNA upstream 474860 64960178 ~ 64980622 (-) False LOC110511498
TU1504007 other downstream 255152 64216504 ~ 64227675 (-) True G1318164
TU1503924 other downstream 398939 64083037 ~ 64083888 (-) True G1318092
TU1502495 other downstream 1194923 63286507 ~ 63287904 (-) True G1316904
TU1501967 other downstream 1578145 62902859 ~ 62904682 (-) True G1316451
TU1501875 other downstream 1715328 62755682 ~ 62767499 (-) True LOC110490571
TU1504423 other upstream 582959 65068277 ~ 65151400 (-) False G1318477
TU1504422 other upstream 599441 65084759 ~ 65151400 (-) False G1318477
TU1505028 other upstream 984649 65469967 ~ 65473164 (-) True G1318935
TU1505596 other upstream 1793727 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 2323129 66808447 ~ 66895692 (-) False LOC110490781

Expression Profile