RNA id: XR_005036179.1


Basic Information

Item Value
RNA id XR_005036179.1
length 2164
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC110511498
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 64960178 ~ 64998613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agctgtctgtctgggtcgCTACAATATTTAATattttctgccctccgaattcatattcgttatatactATAAAAAATGACCCACGGGCTTAGTAAATATTGCAAAAGAAAATCAATGATTTTTACTAAAAGTAATAGGTTTCTGGTTTTACTTACATTGTTGAATATAGTCCTTTATTTATGTGTTGAAAAAGACTGGCATTTGCAAACAACTAAAAATCCAAGACGTCGTCTTGATCTTTCTCCTCTGGAAAGGCCATGTGGCAGGTATAGGTGTTCAGACGTTCCTGAGTACTGGACAGACCATATTTTCCAGAATACATTGACAAGGATGGTGATGAATCAACtggaggctggctggctgctgaaGGATGGATGAACACAATGGACTCAACTTCCACATTGTTCTGTTCATAACTCATCAGTCTTTGGTCGACGCACCACAAACACATCAAGTATCTACTATTAAATGTGGGCTGGGTTTTCACTGTTGGAAATGGATGTTTCAGGAAAAACCTTCAAGTCACGTATCATATATGCAATCTAAGACTTACTAAACCAGTTGACTTAGTTGGCTTACTGCAACACAAGAACCATTACTGACCTCCTACTTCTGTGTTGGACTACTAGGTGGAACAGTCATTCTGTTAGAAGGAACAACGTTAAAATGTGTTGGACTACTAGGTGGAACAGTCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGTCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGTCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGAAACAGTAATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGCCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGTCATTCTGTTAGGAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGCCATTCTGTTAGAAGGAACAATGTTACAATGTGATGGACTACTAGGTGGAACAGCCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGTCATTCTGTTAGAAGGAACAACGTTACAATGTGTTGGACTACTAGGTGGAACAGCCATTCTGTTAGAAGGAACAACGTTACAATGTGTTGGACTACTAGGTGGAACAGGCATTCTGTTAGAAGGAACAACGTTACAATGTGTTGGACTACTAGGTGGAACAGGCATTCTGTTAGAAGGAACAACGTTACAATGTGTTGGACTACTAGGTGGAACAGGCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGCCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGTCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGTCATTCTGTTAGAAGGAACAACGTTACAATGTGTTGATATCAGGATCTCCAAGGTGTCTTTCATCTGAGTTTTACTGTTTGACTCCAAAGACTCTTATGATGGTTTATAGCTTTCAGCTAAATTCATGCAttaaattattatatttttcaCGACCATCTCTTCTTTCTAattcaaatgcctttagtgatgaaTGAAATTATTATAAAATGCATCATTGAGAATAATTGGATGGGATACTACTAGTATTGCTGCTGGACATTAAACACTACTGTCAGATGTTACTGTCTAGTGATTTTCTAAGTGGTGTTTTTTATCAGTCTGTCCCTTTCACTTTGACAGTGATGCTCTAATGATGTCATATCATCATGTGGTAACTGTCCTCATGATGCAGTATTGTTGATAAAAGATGCTGTTGcccatgtgtatgtatgtaatgtgatTGACATGTCCTGAGTCCTGTGTCCCACGTGGTACCCTTtaaccctatgtagtgcactacttttgaccagggcccatagggaatagggaaccatttggaacAGAGGCCTGAGAGTCTAGGAGGATATATGATTCACACAGCACAGTTTGATTGACATGTAGGATAATCTGCAATGGATCAGTAATAATACAATGAATAAACTTCCCCTTTATTTTAAAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1504356 lncRNA downstream 5090 64938188 ~ 64955088 (-) True G1318457
TU1504346 lncRNA downstream 29229 64930543 ~ 64930949 (-) True G1318450
TU1504342 lncRNA downstream 30585 64927343 ~ 64929593 (-) False G1318448
TU1504343 lncRNA downstream 30585 64927633 ~ 64929593 (-) True G1318448
TU1504338 lncRNA downstream 38752 64920376 ~ 64921426 (-) True G1318445
TU1504395 lncRNA upstream 5734 64990791 ~ 65006415 (-) True G1318465
TU1504357 lncRNA upstream 10959 64996016 ~ 65013985 (-) False G1318458
TU1504358 lncRNA upstream 10959 64996016 ~ 65013499 (-) False G1318458
TU1504365 lncRNA upstream 10959 64996016 ~ 65013985 (-) False G1318458
TU1504376 lncRNA upstream 10959 64996016 ~ 65013499 (-) False G1318458
XR_005036188.1 mRNA downstream 14012 64942418 ~ 64946166 (-) True LOC110513474
XR_005036189.1 mRNA downstream 14643 64942418 ~ 64945535 (-) False LOC110513474
XR_005036190.1 mRNA downstream 15272 64942418 ~ 64944906 (-) False LOC110513474
XM_021595640.2 mRNA downstream 251094 64706097 ~ 64709084 (-) True LOC110517721
XM_036944954.1 mRNA downstream 323676 64481916 ~ 64636502 (-) False LOC110499867
XR_005036184.1 mRNA upstream 10915 64995972 ~ 65014411 (-) False LOC118938826
XR_005036185.1 mRNA upstream 10915 64995972 ~ 65014411 (-) True LOC118938826
XR_005036186.1 mRNA upstream 12900 64997957 ~ 65000979 (-) True LOC110510812
XM_036944969.1 mRNA upstream 36348 65021405 ~ 65058643 (-) True LOC118938827
XM_036945553.1 mRNA upstream 168326 65153383 ~ 65231663 (-) True LOC110513258
TU1504148 other downstream 474860 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 732503 64216504 ~ 64227675 (-) True G1318164
TU1503924 other downstream 876290 64083037 ~ 64083888 (-) True G1318092
TU1502495 other downstream 1672274 63286507 ~ 63287904 (-) True G1316904
TU1501967 other downstream 2055496 62902859 ~ 62904682 (-) True G1316451
TU1504423 other upstream 83220 65068277 ~ 65151400 (-) False G1318477
TU1504422 other upstream 99702 65084759 ~ 65151400 (-) False G1318477
TU1505028 other upstream 484910 65469967 ~ 65473164 (-) True G1318935
TU1505596 other upstream 1293988 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 1823390 66808447 ~ 66895692 (-) False LOC110490781

Expression Profile