RNA id: TU1504383


Basic Information

Item Value
RNA id TU1504383
length 1078
lncRNA type sense_over
GC content 0.43
exon number 4
gene id LOC110511498
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 64960178 ~ 64998613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATCTAGTTATGAACGTCAGTTGTGCTTGGAACATTTCAACAGACGTCGTCTTGATCTTTCTCCTCTGGAAAGGCCATGTGGCAGGTATAGGTGTTCAGACGTTCCTGAGTACTGGACAGACCATATTTTCCAGAATACATTGACAAGGAAAACGCCAAGGAGTGTGGAGATGCATCGCAGATctacctgtctgtttctctcttcctcacctGTCTCACTGCCTCCTTCACCTGTCTCAAGGCCTACACGCTGGTCTTccgatgacagacagacagctacctagcctaaacccccccccctctGATTCGGAATCTCCCTGGAATGTTCCAGAATGCCTGACCTTAGCATGCCTGCTGCTGTTTGCGTTATCCTTATCAATCAATATGACTATATGATTTAAGTTATGATATTGATCATTTGGGCTGTTGGACTGAGAGGAATaagctgttgactgactccatgtttgatgactttacaatcacagagagatgttgactgactccatgtttgatgactttacaatcacagagagatgttgactgactccatgtttgatgactttacaatcacagagagctgttgactgactccatgtttgatgactacaatcacagagagctgttgactgactccatgtttgatgactacaatcacagagagctgttgactgactccatgtttgatgactacaatcacagagagctgttgactgactccatgtttgatgactttacaatcacagagagctgttgactgactccatgtttgatgactttacaatcacagagagctgttgactgactccatgtttgatgtctttacaatcacagagatGTTGACTTCAGATGCTTGATGACTTTACAATCACCAAAGTTGTTCTTCTTTGGACAACCGTTCTAAAACCATGAAAGGGCTTTTtggtttcttcttcttcagtGTCTGATAAGAGAACATTCTAGTGTTTCTATGCAAAAGGAAACATGCTTTATTTGACCGTGGAAAGATCCAGTATCTCCAATACGATTCCAAAGGACTTGACTTTGCATTAAGACCATGGAAGACTATCAGTCTGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1504347 lncRNA downstream 10760 64953292 ~ 64969495 (-) True G1318451
TU1504371 lncRNA downstream 14740 64942036 ~ 64965515 (-) False G1318458
TU1504359 lncRNA downstream 18366 64939624 ~ 64961889 (-) False G1318458
TU1504356 lncRNA downstream 25167 64938188 ~ 64955088 (-) True G1318457
TU1504346 lncRNA downstream 49306 64930543 ~ 64930949 (-) True G1318450
TU1504395 lncRNA upstream 6038 64990791 ~ 65006415 (-) True G1318465
TU1504357 lncRNA upstream 11263 64996016 ~ 65013985 (-) False G1318458
TU1504358 lncRNA upstream 11263 64996016 ~ 65013499 (-) False G1318458
TU1504365 lncRNA upstream 11263 64996016 ~ 65013985 (-) False G1318458
TU1504376 lncRNA upstream 11263 64996016 ~ 65013499 (-) False G1318458
XR_005036187.1 mRNA downstream 14445 64962542 ~ 64965810 (-) True LOC110517607
XR_005036188.1 mRNA downstream 34089 64942418 ~ 64946166 (-) True LOC110513474
XR_005036189.1 mRNA downstream 34720 64942418 ~ 64945535 (-) False LOC110513474
XR_005036190.1 mRNA downstream 35349 64942418 ~ 64944906 (-) False LOC110513474
XM_021595640.2 mRNA downstream 271171 64706097 ~ 64709084 (-) True LOC110517721
XR_005036184.1 mRNA upstream 11219 64995972 ~ 65014411 (-) False LOC118938826
XR_005036185.1 mRNA upstream 11219 64995972 ~ 65014411 (-) True LOC118938826
XR_005036186.1 mRNA upstream 13204 64997957 ~ 65000979 (-) True LOC110510812
XM_036944969.1 mRNA upstream 36652 65021405 ~ 65058643 (-) True LOC118938827
XM_036945553.1 mRNA upstream 168630 65153383 ~ 65231663 (-) True LOC110513258
TU1504148 other downstream 494937 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 752580 64216504 ~ 64227675 (-) True G1318164
TU1503924 other downstream 896367 64083037 ~ 64083888 (-) True G1318092
TU1502495 other downstream 1692351 63286507 ~ 63287904 (-) True G1316904
TU1501967 other downstream 2075573 62902859 ~ 62904682 (-) True G1316451
TU1504423 other upstream 83524 65068277 ~ 65151400 (-) False G1318477
TU1504422 other upstream 100006 65084759 ~ 65151400 (-) False G1318477
TU1505028 other upstream 485214 65469967 ~ 65473164 (-) True G1318935
TU1505596 other upstream 1294292 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 1823694 66808447 ~ 66895692 (-) False LOC110490781

Expression Profile