RNA id: XR_005036185.1


Basic Information

Item Value
RNA id XR_005036185.1
length 1934
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC118938826
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 64995972 ~ 65014411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgactttacaatcacagagagctgttgactgactccatgtttgatgtctttacaatcacagagagctgttgactgactccatgtttgatgactttacaatcacagagagctgttgactgactccatgtcTGATGACTACAATCACAGAGAgatgttgactgactccatgtttgatgtctttacaatcacagagagctgttgactgactccatgtctgatgactttacaatcacagagagctgttgactgactccatgtcTGATGActacaatcacagagagctgttgactgactccatgtctgatgtctttacaatcacagagagctgttgactgactccatgtttgatgtctttacaatcacagagagctgttgactgactccatgtttgatgACTTTACAATCACCAAAGTTGTTCTTCTTTGGACAACCGTTCTAAAACCATGAAAGGGCTTTTtggtttcttcttcttcagtGTCTGATAAGAGAACATTCTAGTGTTTCTATGCAAAAGGAAACATGCTTTATTTGACCGTGGAAAGATCCAGTATCTCCAATACGATTCTAAAGGACTTGACTTTGCAATAAGACCATGGAAGACTATCAGTCTGTGGATGATGTGTTTTATAAATGGTTTTGATAAAATAATACTCTGGATTCATGCATGTGTTGTCTGTTTACCTTAAGCCATGAAATGGAGGAAGAACCTTGAATAAGGCAGAGGCATCTTTAAACAGTGATATATTTCAGATAGTAGAATCAGTGACCCCTGCTGGTTGGAATATGACATTGCAGGATGGTGATGAATAAACtggaggctggctggctggctgaaggATGGATGAACACAATGGACTCAACTTCCACATTGTTCTGTTCATAACTCATCAGTCTTTGGtctacacaccacaaacacatcaAGTATCTACTATTAAATGTGGGCTGGGTTTTCACTGTTGGAAATGGATGGACTGCTTCAGGAAAAACCTTCAAGTCACATATCATATATGCAATCTAAGACTTACTAAACCAGTTGACTTAGTTGGCTTACTGCAAAACAAGAACCATTACTGACCACCTACTTCTGTGTTGGACTACTAGGTGGAACAGCCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGTCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGTCATTCTGTTAGAAGGAACAACGTTACAATGTGTTGATATCAGGATCTCCAAGGTGTCTTTCATCTGAGTTTTACTGTTTGACTCCAAAGACTCTTATGATGGTTTATAGTTTTTAGCTAAATTCATGCAttaaattattatatttttcaCGACAATCTCTTCTTTCTAattcaaatgcctttagtgatgaaTGAAATTAGTATAAAATGCATCATTGAGAATAATAGGATGGGATACTACTAGTATTGCTGCTGGACATTAAACACTACTGTCAGATGTTACTGTCTAGTGATTTTCTAAGTGGTGTTTTTTATCAGTCTGTCCCTTTCACTTTGACAGTGATGCTCTAATGATGTCATATCATCATGTGGTAACTGTCCTCATGATGCAGTATTGTTGATAAAATATGCTGTTGcccatgtgtatgtatgtaatgtgatGTCCTGAgtcctgtgtgtcttctgtgtgtctGGCTTGGCTTGTGTCCCACGTGGTACCCTTtaaccctatgtagtgcactacttttgaccagggcccatagggaatagggaaccatttggaacacagcctgAGAGTCTAGGAGGCAATATGATTCACACAGCACAGTTTGATTGACATGTAGGATAATCTGCAATGGATCAGTAATAATACAATGAATAAACTTCCCCTTTATTTTAAAGTTGTTCTCAGTTTTGATGGTTGAATTTTATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1504383 lncRNA downstream 11219 64980255 ~ 64984753 (-) True LOC110511498
TU1504347 lncRNA downstream 26477 64953292 ~ 64969495 (-) True G1318451
TU1504371 lncRNA downstream 30457 64942036 ~ 64965515 (-) False G1318458
TU1504359 lncRNA downstream 34083 64939624 ~ 64961889 (-) False G1318458
TU1504356 lncRNA downstream 40884 64938188 ~ 64955088 (-) True G1318457
TU1504439 lncRNA upstream 69685 65084096 ~ 65084339 (-) True G1318488
TU1504452 lncRNA upstream 75721 65090132 ~ 65091285 (-) True G1318491
TU1504466 lncRNA upstream 85120 65099531 ~ 65103149 (-) False G1318498
TU1504467 lncRNA upstream 86289 65100700 ~ 65102103 (-) True G1318499
TU1504465 lncRNA upstream 86477 65100888 ~ 65103149 (-) True G1318498
XR_005036181.1 mRNA downstream 10723 64960178 ~ 64985249 (-) False LOC110511498
XR_005036180.1 mRNA downstream 10738 64960178 ~ 64985234 (-) False LOC110511498
XR_005036183.1 mRNA downstream 10909 64960178 ~ 64985063 (-) False LOC110511498
XR_005036178.1 mRNA downstream 10915 64960178 ~ 64985057 (-) False LOC110511498
XM_036944969.1 mRNA upstream 6994 65021405 ~ 65058643 (-) True LOC118938827
XM_036945553.1 mRNA upstream 138972 65153383 ~ 65231663 (-) True LOC110513258
XM_036944963.1 mRNA upstream 254579 65268990 ~ 65302828 (-) False LOC110517393
XM_036944964.1 mRNA upstream 254579 65268990 ~ 65302828 (-) False LOC110517393
XM_036944967.1 mRNA upstream 254579 65268990 ~ 65303134 (-) False LOC110517393
TU1504148 other downstream 510654 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 768297 64216504 ~ 64227675 (-) True G1318164
TU1503924 other downstream 912084 64083037 ~ 64083888 (-) True G1318092
TU1502495 other downstream 1708068 63286507 ~ 63287904 (-) True G1316904
TU1501967 other downstream 2091290 62902859 ~ 62904682 (-) True G1316451
TU1504423 other upstream 53866 65068277 ~ 65151400 (-) False G1318477
TU1504422 other upstream 70348 65084759 ~ 65151400 (-) False G1318477
TU1505028 other upstream 455556 65469967 ~ 65473164 (-) True G1318935
TU1505596 other upstream 1264634 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 1794036 66808447 ~ 66895692 (-) False LOC110490781

Expression Profile