RNA id: XM_036944969.1



Basic Information


Item Value
RNA id XM_036944969.1
length 668
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC118938827
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65021405 ~ 65058643 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctttcttaggACCTGGCCTGCTACCTCATCGACAGCAATGCTTTCATAATCATCTCCAAAGAAAAAAGCCATGTGGGGAGGTTCTTTGGAGAAGTTGACGGCTCAGTGATGGCACGCCTTATCAAGATGGGCATGTTCAAAAGggTATCTCTGTACGACTATCAGGCCATGTGTAAGATGGGAGGACATTCTGCCAGCAGCGCCAGACCCCTTCTTAGTccCTTCTATGGTCTGGCGGCTGCTCTAAAGTGGTTCCTCACCAACTTCCTGCTGTTTTTACTGGAGTTCAACATCTGTGGTCTCTGGCACTCTGACCGCTTTGCTGAAGCCAAGCCTGGCTTCAAAGCGTCGGCCCAGAAGAAGAAGGGAGACATCCTGCAGCCGTGTGACACAGAGTACCCCAGCTTTGTCTACGAGCCCTCCATCAAGGAGACCAACAGCCTCATTAAGTGTGGACGCTGTcagaagatgTTTGTAACCCAGGCTGTCCCTGACAGTAACCTGCTGATGTTGGTGGTACAGGCAGACTGTGACTGTTCCCGTCAGTACCCCGCTATCACCATGGAACCCAAGGAAGTGAAATATATCCTTTAACATGAAGAGCTATCTTACTGGTTCACTCTCTCTGACACAGACAGTGATTGATATAATTATAATGGTGTTGTGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1504361 lncRNA downstream 7420 64978451 ~ 65013985 (-) False G1318458
TU1504357 lncRNA downstream 7420 64996016 ~ 65013985 (-) False G1318458
TU1504365 lncRNA downstream 7420 64996016 ~ 65013985 (-) False G1318458
TU1504367 lncRNA downstream 7906 64942036 ~ 65013499 (-) False G1318458
TU1504362 lncRNA downstream 7906 64978451 ~ 65013499 (-) False G1318458
TU1504439 lncRNA upstream 25453 65084096 ~ 65084339 (-) True G1318488
TU1504452 lncRNA upstream 31489 65090132 ~ 65091285 (-) True G1318491
TU1504466 lncRNA upstream 40888 65099531 ~ 65103149 (-) False G1318498
TU1504467 lncRNA upstream 42057 65100700 ~ 65102103 (-) True G1318499
TU1504465 lncRNA upstream 42245 65100888 ~ 65103149 (-) True G1318498
XR_005036184.1 mRNA downstream 6994 64995972 ~ 65014411 (-) False LOC118938826
XR_005036185.1 mRNA downstream 6994 64995972 ~ 65014411 (-) True LOC118938826
XR_005036186.1 mRNA downstream 20426 64997957 ~ 65000979 (-) True LOC110510812
XR_005036181.1 mRNA downstream 36156 64960178 ~ 64985249 (-) False LOC110511498
XR_005036180.1 mRNA downstream 36171 64960178 ~ 64985234 (-) False LOC110511498
XM_036945553.1 mRNA upstream 94740 65153383 ~ 65231663 (-) True LOC110513258
XM_036944963.1 mRNA upstream 210347 65268990 ~ 65302828 (-) False LOC110517393
XM_036944964.1 mRNA upstream 210347 65268990 ~ 65302828 (-) False LOC110517393
XM_036944967.1 mRNA upstream 210347 65268990 ~ 65303134 (-) False LOC110517393
XM_036944965.1 mRNA upstream 212464 65271107 ~ 65302828 (-) False LOC110517393
TU1504148 other downstream 536087 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 793730 64216504 ~ 64227675 (-) True G1318164
TU1503924 other downstream 937517 64083037 ~ 64083888 (-) True G1318092
TU1502495 other downstream 1733501 63286507 ~ 63287904 (-) True G1316904
TU1501967 other downstream 2116723 62902859 ~ 62904682 (-) True G1316451
TU1504423 other upstream 9634 65068277 ~ 65151400 (-) False G1318477
TU1504422 other upstream 26116 65084759 ~ 65151400 (-) False G1318477
TU1505028 other upstream 411324 65469967 ~ 65473164 (-) True G1318935
TU1505596 other upstream 1220402 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 1749804 66808447 ~ 66895692 (-) False LOC110490781

Expression Profile