RNA id: XM_036944963.1


Basic Information

Item Value
RNA id XM_036944963.1
length 3714
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110517393
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65268990 ~ 65303134 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAACTCATCGTGCCTAATTGTTTACAATCTGTTCGACGAAACATGGCTGCTGTCAAGTGAGCTGTTGATGGTGTTCCGAACAGTTACAATTCACTTATATGTTATCTTTAATGAttcattttaaatattttaattaaTAACAGTGTATTTTAACGGGGATAGTTTCAATAGTTTTCGTTTTACTTTGGAACCGTCACAGATTCCTTCACCCGTGATAACGCGCCAGTTAGCATCACTAGCTAACTAGCTCAAGGAGAACAATGACGGCAAGCTCATCGGGTGGAAACACCTGTCTCACTGCTAAAGGTTTGGACATTAGTCTCGCAGCCCTGCAAAGACAAGATCCTTACATCAACAACATTGTCGATGTGGCGAGTCAAGTGGCGTTGTATACTTTCAACAACCGATCCAATGAATGGGAGAAGACTGACGTGGAGGGGACCCTGTTTGTCTATACAAGGCTAGCATCTCCCAGACACGGCTTCACCATAATGAACAGGCTGAGTATGGAGAACCTGACTGAACCCATCACTAAAGACCTGGACTTCCAGCTGCAGGATCCGTTCCTGCTCTACAGGAATGCTCGCTtagctATCTATGGCATCTGGTTCTATGATAAGGCGGACTGCCAGCGCATCGCAGAGCTTATGAAGTAtctgACGAAACAGGAACAGGCCCTAGCCCAGCGTGGTCAACAGGGTCAGGGGGGCTTGGTGTCTCCTCGAGCACTGGAGGCAGCAGGGGACCCTGGGAAGGGACAAGGAGTGGACATCCTGCAGATGCTGACCAAAGCACGCAATGAGTATGACAAGggtggTCAACCAGAGCCTAAAGAGATAGGAGGGTGTAGTGTCCTTAATGCCAACCCCAGCCTGATCAAACCTATCCCTGTCAAACCTATGGAGAGATATCCCCAGCCTGGGCTACAGGAGAGGCCTGTTCAGGATAGTCGAGGAGagcccaggcctctctctctggccaCTCTGTTTGGTGTCCAACAGGCCAGAGCAGAGCTGGTCTCTCCCATGGCTGGGTCAGGAGGTCCAGGGCCCCAGGGGGAGCCTGGAGGTGTCCGCCCGGCGGTGGCCCGCTCCTTGTCCTACGACGACCCAGTCCAGGCCCAGCTCCGTCTCCAGGCCCAGGAAGGGGGTCTGATCTCAGGTAGCAGCCCCCCGCAGCACTGCCCTGCCTTCCAGAAGCTCATGAAGGATGCcgcctcctccgcctcctcctcccaGCCTCAGAAGCAGCTCCAGAGAGGAGGTCCTATGGAGCAGCTCCAACTCGTCTCCGAGTCACCCGAGAACAGACTGCGTGAGAACGGAGCCCCCTCTGTCCTCCACCATCAGACCCAGGCCAGACAAGACCCCATCCAGAGACTGTTCCAGAACCAGCCCACTTCCACCACCCCTTCAATGACCACCTCCGCTCCCTGtcgtcctcgtcctcctcctctcatccctggtCTCCAGTCTGCCCATCCTCAGCCTCTCCTGGTGGATGCTTTGGGCTTCCCTGGTTCTCAACACCatcacctccctcctcaccaggCCCAGCCGTTGTACTTCAGCCCCACCAAGCCCCCCCAGATGCTGGTCCCCATGTTGCCCTCACATCCCTCCCAGTCTCAACCTCCCCACCAACCCCAGCCTGGTCATCCTCAGTCACAGCCCTGTCACCCTTTCCACCCCTTCCAGCACCCCCAGCCCTTATACCTCCAACCCCTGCCAGGTCACCCCCAGCAGGGGCAGCTAACTGGTGTCGTCTCCCCCCATGAGCTGCTCCAGAGGCTGCAGCTGGTTCAACAGGAGCAGAGTCTGGTCCCGGAGCCCACTAGGCCTTCCTCTAACCTGGCTCCTCGCTTCCACGAGCCAGCCCCTCTAGCCCCCTCAGCCCCCCCAGCCATGGGGCAGCACGGCCAGCAGTCGGCTCATTCTACAGCCAGGTCTCTGGACAGTTTGGCTGACAAGAACTCTGCAGGCACCGCTGCTCAGAAGTTCCAGgtgaTCTCCCCCCAGCGTATCCCAGCCACGGTGGCACCTACCCTGCTCCTGTCCCCCAGTGTCTTCTCCCAGGCCAAGCGCCCCCAGGCCAAAGCCTCTGGGGACACCCACTGCCCCCCTGGCTCTCATCCTCCCTCAGCCCTCCTGGCCCCACAGGCCCCGGACGACCCCCAACCCAGGGGCCTCTCTAAAAGCCAGCTCCAGGCCACCCTGCTGCACCTCAtacagaaCGACAGTTCCTTCCTGGATACCATCTATGAGTCCTACGCCCAACGCTTCTCCACGGAAGCCACCACGAACAAGTTCTGAGGCCAGGGTCCTGTTGAATGAGGCACCCAATAGAAACATGTTTCAGGGTCCTGTTGAATGAGGCACCCAATAGAAACATGTTTCAGGGTCCTGTTGAATGAGGCACCCAATAGAAACATGTTTCAGGGCCCTGTTGAATGAGGCACCCAATAGAAACATGTTTCGGGGTCCTGTTGAATGAGGCACCCAATAGAAACATGTTTCAGGGCCCTGTTGAATGAGGCACCCAATAGAAACATGTTTCAGGGTCCTGTTGAATGAGGCACCCAATAGAAACATGTTTCAAAACGCTTTGCAACAGGAAGTTGAAAATAATCATTTCTTCTGGGACAAGTCCAGGGAGACCCTCTCCCTGTTTTGTCTGTTTTCTTCCATCAGGTGCCTAATGAGTGAGTCCCGGGGGTCATGCCCAAACCGGCACAATCATTTTATAATCTATATAATCTATTTGCTGATCTAGCTAAATTCGTCTTCCTAATGTGAGCGCTGTGGATGTAACCTGTGGATTCAGATTACAACGACATTTGATTTTTTGCCATTTTTAAGATGTTTTTatcgtaaaaataaaaataattgaaaTGTTGAATGGGATATTGTAGTAAAAGCTATCAAACAGTTATATATGTTTTGGACTGACTGAACTTGGTTTAAACGATACCTCTCTTAACTAAAATGGTTCTCCAGGCATTTGACAATGTTTAATTCACTTGGAAGTTGGATGAGTTTATTTTAACACTTTTTATTAAGTGGGAAGTCCTGTTTTTTAAAATAGACAATATTTAAAATCCTTAAGCTTGAGCTGAGCTGAGCTACCTCACAGAAGTGAGTCTCTGTTGAGGTAAACGTTCACCCGGAGAAGGAATCACACCTTAATGTGGAACCTGGCATTTATTTTCATCATGCCATTGTCTTGATTTCAAGATGTCTGAAACTCAAAATGTACAACGACACGGTTCTTTCAGAATCTTCTGTGCTCACACGTGCCAGACTAGTTTGGTAGACGGTTTATATGTATCAAGCAAAGTGTTTAAGAAACTATTTTatgttatgagagagagagagagagataatagaataGTTTGTCTATTTTTCTATGCCGTTGTCATACAAGGAaattttaaaaacacattttaaaaacacAATGTTGCAATGACCTGTACCACTGAAACAGGAAGTGTTTTAATTTACACAATCTGGCATGTATCAATTATTTTTAAATCCGTGGAAATCTGGAGTCCCATCATTGTTGTTCTTTTGGTTTTGAAAACCTCTATTCTTTTTTCTAATAGTCAAACATTCTGAGTGACCGGACAGCCCACTTCATAACTTGTTTCTTGTGTAATGATTGAACCGTCTCTGGACCACAACTGAATTGgaaataaatgaatgtcttcttcAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1504544 lncRNA downstream 13126 65255487 ~ 65255864 (-) True G1318561
TU1504538 lncRNA downstream 35076 65229989 ~ 65233914 (-) True G1318555
TU1504531 lncRNA downstream 48127 65220441 ~ 65220863 (-) True G1318548
TU1504509 lncRNA downstream 108348 65160011 ~ 65160642 (-) True G1318529
TU1504424 lncRNA downstream 115703 65150518 ~ 65153287 (-) True G1318477
TU1505018 lncRNA upstream 131110 65433938 ~ 65434153 (-) True G1318925
TU1505019 lncRNA upstream 137260 65440088 ~ 65440350 (-) True G1318926
TU1505027 lncRNA upstream 165556 65468384 ~ 65468714 (-) True G1318934
TU1505034 lncRNA upstream 187210 65490038 ~ 65491611 (-) True G1318941
TU1505056 lncRNA upstream 212985 65515813 ~ 65517510 (-) True G1318958
XM_036945553.1 mRNA downstream 37327 65153383 ~ 65231663 (-) True LOC110513258
XM_036944969.1 mRNA downstream 210347 65021405 ~ 65058643 (-) True LOC118938827
XR_005036184.1 mRNA downstream 254579 64995972 ~ 65014411 (-) False LOC118938826
XR_005036185.1 mRNA downstream 254579 64995972 ~ 65014411 (-) True LOC118938826
XR_005036186.1 mRNA downstream 268011 64997957 ~ 65000979 (-) True LOC110510812
XM_036944971.1 mRNA upstream 575182 65878010 ~ 65891457 (-) False LOC110512490
XM_036944970.1 mRNA upstream 575182 65878010 ~ 65892365 (-) True LOC110512490
XM_036944972.1 mRNA upstream 589620 65892448 ~ 65898816 (-) False LOC110511373
XM_036944973.1 mRNA upstream 589620 65892448 ~ 65898816 (-) False LOC110511373
XM_036944974.1 mRNA upstream 589620 65892448 ~ 65898816 (-) False LOC110511373
TU1504423 other downstream 117590 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 117590 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 783672 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 1041315 64216504 ~ 64227675 (-) True G1318164
TU1503924 other downstream 1185102 64083037 ~ 64083888 (-) True G1318092
TU1505028 other upstream 167139 65469967 ~ 65473164 (-) True G1318935
TU1505596 other upstream 976217 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 1505619 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 1553351 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 1561013 66863841 ~ 66867740 (-) True LOC110490781

Expression Profile