RNA id: XM_036944971.1


Basic Information

Item Value
RNA id XM_036944971.1
length 2040
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC110512490
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65878010 ~ 65892365 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTAGGCTGGTACCAGTGCGTTGTGCGAACATTGGCGGTGCTTGCAGGGCACTTTCCCCCACACAGTTCTGCGGATATCTCGCCGTAACAATATCAGAAGAAATGTCGCGCCACTGACGGATTTTACAAGTCGCCCTTGACTTAATCTATACGTTTAAAGACCCGGAGCCCAACACTGTCCCCCCAtggaggagagcggaggagaggtGCATGAGAACCAGGTgttgatggaggagaggggtgtcTCTCCTGGAGATTCCCCAGGGACGGAGGAGGGTTCCCCAGCCGTGGTCCGGCCCCGtgacccccccacctccaccctgCAGGACGCAGGGCCTCGGAAGAGCAGCTCCTCCCGCTCCTCCAGGAAGAGCTTCCGTCTGGACTAccggttggaggaggaggtgactGGGTCGAGCCGGGACAAACATGGCCGCTTCACAAACCCCTGGTCCACGTGGAAGTTCCCGTCCTGGTCCACCCTGCTGCGTTTCTTCCTGCTGGAGAAGGATCACAGTAATGTACCCAGCTCCAAAGAGGTCTTAGACAAAGAGCTCCCAGTAGTGGAGCCTTGGTTCCTCCGTGTCCCCGAGGCAGCCGACGGAGCCGTGGGGTCTGGTCTCAGGGTGACCTGGCTGGGCCACGCATCAGTCCTGGTAGAGATGGACGGCCTGGTCATCCTCACTGACCCCATCTTCAGCCAGAGGGCGTCTCCCTTCCAGTTCATGGGCCCCAAGAGGTACCGGGATCCCCCTTGTACGGTTGATCAACTCCCCCGGATCGACGCGGTTGTCATCAGCCACTCCCACTATGACCATCTGGACGCCGGCACCGTGACCCAGTTGAACGAGCGGTTCGGTGGGGATCTCCGATGGTTTGTGCCGTTGGGACTCATGGACTGGATGCAGAAGAGCGGGTGTGAGAAtgtgatagagttagactggtggGAGGAGAACTGTGTGCCAGGTCACGACGAGGTCACGTTTGTGTGTACACCGGCGCAGCACTGGTGCAAGCGCACCCCCACGGACGATAACCAGGTGCTGTGGGGGAGCTGGTCTGTCCTGGGGCCCTGCAACCGCTTCTTCTTTGCTGGAGACACCGGCTACTGCTCGTCCTTCCAGGAGATTGGGAGGCGCTTTGGTCCGTTCGACCTGGCGGCCATACCCATCGGCGCGtacctgcccagAGATGTAATGCGTGGACAGCATGTGGACCCGGAGGAGGCTGTGCAGATCCACAAAGACATCCAGGCCAGACACTCCCTGGCTATTCACTGGGGAACCTTCGCTTTAGCTTACGAGttttaCTTAGAGCCTCCAGTGAGACTCAGGGAGGCCATGGAGAAGAATGGGTTGAATGTGGAGCACTTCTTTGTCCTGAACCATGGAGAATCCAGAGTGCTGAACACAGACCAGGAAGTCTTTGAATGATTGGACCAAAATGGTGCCTAAGCCCCTCCCACAAGCTGTAGAAGACTAAAACAACACTGTGGCGTAAAGCATACAGCTGAATCAATGGTATAAGCTCTCATCGTCAACAGTCTAGTTGATGGCATACTAGAGAGCTGAATGATGGCGACTATGAAATGAACACCCTGTCCATTTATCCAATCGTTGTTTTTCTATGCCAAATGTCTGACGCCAGAACTGTCAAGAAGAAACCTTTCTGAAAATGTTTTGCAGATGATGTGTTGTCGTATAGCTGCAGTGTCACCAGTCGTGTCAACGTGATGAACGTGTGTATTTtacacactggacacaccacaCGTCATTCTGCTCCGACTCACACATTGTTTCTGTGCACAACTACAATGTGTATGGCTTCATCGTCTAGCACATTCACCAATCACATTTTGTAGCGTTATGTAACCAAATCTTCTGGAGTTATCGAATGCTGAACAGTTCatgtgtaatatactgtaagtACTTGGACGGTGCAATAATGTTTTAGTAGGTCTGGAAACACGCTGTTGTATGTGGGGGTTTTCACCCTCCTCCGTGTTACAGCTGTCATTAAAACTCTGCTCTCTGAAGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505253 lncRNA downstream 10275 65866213 ~ 65867735 (-) True G1319094
TU1505254 lncRNA downstream 14129 65860095 ~ 65863881 (-) True G1319095
TU1505269 lncRNA downstream 27818 65847523 ~ 65850192 (-) True G1319108
TU1505203 lncRNA downstream 53366 65786250 ~ 65824644 (-) True G1319069
TU1505221 lncRNA downstream 61209 65816275 ~ 65816801 (-) True G1319084
TU1505281 lncRNA upstream 30735 65922192 ~ 65924248 (-) True G1319116
TU1505284 lncRNA upstream 39222 65930679 ~ 65930929 (-) True G1319119
TU1505285 lncRNA upstream 40631 65932088 ~ 65932300 (-) True G1319120
TU1505293 lncRNA upstream 61474 65952931 ~ 65953255 (-) True G1319126
TU1505295 lncRNA upstream 68194 65959651 ~ 65960031 (-) True G1319128
XM_036944967.1 mRNA downstream 574876 65268990 ~ 65303134 (-) False LOC110517393
XM_036944963.1 mRNA downstream 575182 65268990 ~ 65302828 (-) False LOC110517393
XM_036944964.1 mRNA downstream 575182 65268990 ~ 65302828 (-) False LOC110517393
XM_036944965.1 mRNA downstream 575182 65271107 ~ 65302828 (-) False LOC110517393
XM_036944966.1 mRNA downstream 575182 65272040 ~ 65302828 (-) True LOC110517393
XM_036944972.1 mRNA upstream 991 65892448 ~ 65898816 (-) False LOC110511373
XM_036944973.1 mRNA upstream 991 65892448 ~ 65898816 (-) False LOC110511373
XM_036944974.1 mRNA upstream 991 65892448 ~ 65898816 (-) False LOC110511373
XM_036944975.1 mRNA upstream 991 65892448 ~ 65898817 (-) False LOC110511373
XM_036944976.1 mRNA upstream 991 65892448 ~ 65898817 (-) False LOC110511373
TU1505028 other downstream 404846 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 726610 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 726610 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1392692 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 1650335 64216504 ~ 64227675 (-) True G1318164
TU1505596 other upstream 387588 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 916990 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 964722 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 972384 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 1069494 66960951 ~ 66961304 (-) True G1319847

Expression Profile