RNA id: XM_036944972.1


Basic Information

Item Value
RNA id XM_036944972.1
length 2126
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC110511373
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65892448 ~ 65898819 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttagctCTCACACACTGTACTGAAGTAAGGAGAGTGACCCCTGGTGGTAATGGAAGGGACATGCAGTGCAACTGTCTCCCTGGTGACGGCAATAAGAGTGTGGCAATCATTGATATGGACAGACTTCATTCTGAGTAACAAAGTGCAACGAGGAAGAATTGTGTGAAACAAAATGCTCTCGGGAGAACTGGACTGGCTGGTCTTACCGTACACGAGGAGGTCGTTGTTTAGAGGTGGTCTACGCTCGTCTCTAATCCCTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCGGGATAAGGTGCAGGAGAGACCTCTTGACTGGACCGGGATAAGGTACAGGAGAGACCTCTTCACTGGGCCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAGGTGCAGGAGAGACCTCTTCACTGGACCAGGATAAAACCAGAGGAACAGGAACTTGAGGCCATGGCAGAGCAGGGGGAAGCCCGGGGGACAGGAGAGGAACCACGAACACCCAACACGCCATCCCTGAACCACCGGGGGACAGGGGGGACTTTCGGGGAGGGTCAAGATGTGAAGGGAGAAGTCATAACCAGATCCACGAGGGAGAAGAACGGTCGCTTCACCAACCCCTGGCCCACATGGCACTACCCCTCCTCTGCCTCCCTGCTCCGGTTCTACCTACTAGATAAGGACCACAGCAACCTACCCCGCTCCAAAGAGGAGTTAGACCGTGAGCTTCCACTGCTGAAACCGTCCTTCATCCAGAGTCCTGAGGTGTCAGGAACCGTGGGGTCTGGTCTCAGGGTGACCTGGCTGGGCCACGCATCCGTCCTGGTAGAGATGGACGGCCTGGTCATCCTCACTGACCCCATCTTCAGCCAGAGGGCGTCTCCCTTCCAGTTCATGGGGCCCAAGAGGTTCAGGGGCCCGCCGTGTACAGTAGATCAACTACCCAAGGTGGATGCTGTGCTCATCAGCCACACCCACTACGACCACCTGGACGTAGGTTCAGTTAGCAGCCTCAATAAGCGCTTCGGCGCCGAGCTGCGTTGGTTTGTCCCTCTGGGGCTCCAGGGTTGGATGCAGAGCTGTGGCTGTAAGAACGTGATAGAGTTGGACTGGTGGGAGGAGAGCTGTGTCCCTGTCCCCAGCCCTGTCGCTGTCCCCAGCCCTGTCGCTGTCCCCAGCCCTGTCGCTGTCCCTGTCCccagccctgtccctgtccccagccctgtccctgtccccagcCCTGTCGCTGTCCccagccctgtccctgtccccagtGGTGTCAGCCAGGATAAGGTCATGTTCGTATTCACCCCAGCCCAGCACTGGTGCAAGCGCACCCCAACAGACGATAACAGGGTGCTGTGGGGGAGCTGGTCTGTCCTGGGGCCCTGCAACCGCTTCTTCTTTGCTGGAGACACCGGCTACTGCTCGTCCTTCCAGGAGATTGGGAGGCGCTTTGGTCCGTTCGACCTGGCTGCCATATCCATCGGCGCGtacctgcccagAGATGTAATGAAGTCACTGCATGTGGACCCAGAGGAGGCTGTGGAGATTCATAAGGACGTTAAGGCCAAACACTCCCTGGCTATTCACTGGGGGACCTTCGCATTAGCTCATGAGttttaCTTAGAGCCTCCAGTGAGACTCAGGGAGGCCATGGAGAAGAATGGGTTGAATGTGGAGCACTTCTTTGTCCTGAACCATGGAGAATCCAGAgtgatggggggagaaagagaaggagggggcgTTTGACTGATCAGATGGGCTACATTGCCAGAAGCTGCAATATGAAAGAGTTTGGACTTCTGACAAAGAGATCTAAGCTTGGcattatagtagtaatagtttgcCTGATAAAGGGGCACTGATGTACATATTTGCAactttaaaataaatatatgtttttaatgCCAAGTGATATTGATTGcactattaaatacattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505253 lncRNA downstream 24713 65866213 ~ 65867735 (-) True G1319094
TU1505254 lncRNA downstream 28567 65860095 ~ 65863881 (-) True G1319095
TU1505269 lncRNA downstream 42256 65847523 ~ 65850192 (-) True G1319108
TU1505203 lncRNA downstream 67804 65786250 ~ 65824644 (-) True G1319069
TU1505281 lncRNA upstream 23376 65922192 ~ 65924248 (-) True G1319116
TU1505284 lncRNA upstream 31863 65930679 ~ 65930929 (-) True G1319119
TU1505285 lncRNA upstream 33272 65932088 ~ 65932300 (-) True G1319120
TU1505293 lncRNA upstream 54115 65952931 ~ 65953255 (-) True G1319126
TU1505295 lncRNA upstream 60835 65959651 ~ 65960031 (-) True G1319128
XM_036944970.1 mRNA downstream 83 65878010 ~ 65892365 (-) True LOC110512490
XM_036944971.1 mRNA downstream 991 65878010 ~ 65891457 (-) False LOC110512490
XM_036944967.1 mRNA downstream 589314 65268990 ~ 65303134 (-) False LOC110517393
XM_036944963.1 mRNA downstream 589620 65268990 ~ 65302828 (-) False LOC110517393
XM_036944964.1 mRNA downstream 589620 65268990 ~ 65302828 (-) False LOC110517393
XM_036944979.1 mRNA upstream 2926 65901742 ~ 65917407 (-) False LOC110511371
XM_036944978.1 mRNA upstream 2926 65901742 ~ 65979435 (-) True LOC110511371
XM_036944980.1 mRNA upstream 82825 65981641 ~ 65986430 (-) False LOC110499707
XM_036944981.1 mRNA upstream 82825 65981641 ~ 65986435 (-) True LOC110499707
XM_036944982.1 mRNA upstream 89116 65987932 ~ 66009466 (-) False LOC110500955
TU1505028 other downstream 419284 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 741048 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 741048 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1407130 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 1664773 64216504 ~ 64227675 (-) True G1318164
TU1505596 other upstream 380229 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 909631 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 957363 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 965025 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 1062135 66960951 ~ 66961304 (-) True G1319847

Expression Profile