RNA id: XM_036944980.1


Basic Information

Item Value
RNA id XM_036944980.1
length 3080
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110499707
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65981641 ~ 65986435 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTAGACAAGAGGAACGTAATCGTTTTAGCTCCCGTGTTCACATCGGACCAAGAACAATGTAACGTACTTCCGGTGCTTGTTTGGCTGGCAATTTGAAATTTGTACAATGTAAAATCGTGTTGTTTCCGTAGATTTAATGGCAATCTTATTAAATGACACGTTCCAAATCACTACTGCAAGAGTCCTATAGTGACATATACGAGTTTAACGTCACTTTCTAGTCTCTATACTATGTTTAAAAGGATGGCTGAATTTGGACCAGATTCCGGGGGTAGAGTGAAGGGTGTTACGATCGTCAAACCCATCGTATTCGGAAACGTTGCTCGGTATTTTGGAAAGAAGCGAGAGGAGGACGGACACACTCACCAATGGTCTGTGTACGTGAAACCATACAGAAACGAGGATATGTCTGCATATGTGAAGAAAATACAGTTCAAGCTACATGAAAGTTACGTGAATCCACTCAGAGTCGTGACGAAGCCTCCGTACGAGATCACAGAGACGGGCTGGGGAGAGTTTGAGATCATCATCAAGATATTTTTCATCGACCCCAATGAGAGGCCGGTGACTCTCTACCACCTACTGAAGCTCTTCCAGTCTGACTCCAGTGCCATGCCCAAGAAGACGGTGGTCTCTGAATTCTATGATGAAATGATCTTCCAGGACCCCACAGCCATGATGCAACAGCTCCTTAGCACCTCTAGACAACTGACCCTGGGGGCCTATAAGCACGAGACTGAGTTTGCGGAGCTGGAGCTGCGGACGCGGGAGAAGCTGGAAGCAGCGAAGAAGAAGACCAGTCAGGAGATCACAGACCTGAAGGATAGACTGAAGGCCAGCAGAGAGACCATCAACTTCCTGAAGGGAGAGATACGCAagctggaggaggaggaccagatCAAAgaccactgatacacacacactgggtgaATCTCAATGGTATTTTCTTGATTCCTCATACCTTCTCTCCTTGCATCCTTCTCAAAACTCATTGGAACACAAGATATGAGGTTCCTTGTCTTGGATCTTCTCTTCCTatgtgttttgagaaggagatgagagaggacgcAATGAATCATGGATATACAATTGAGACACACCCTAAATTCCAAATCAACCTATAGGCCATCTCCCCGAGGCACCCCTGTATATCTGAAGGGTTTGGATAGGTGGATGCAATATGGTGCTTGTGACTCACCTTGTCTTCCCGATTTCTGATAGGCTGGATGGAGTTTACGCCTTTTTTCTTCCACCTATCCAACCCCTTCAGAGCAAAGGGAGGTGCCAGGGAGGAGGGGCTAGGGATGGATTTGGAAATTGCCCTCGTCTGGAATCCACACAGAATATCACTCCATTTTACGATTGTTTAATTCCTTAATATAATATCTGTCATTTCTCAGATGCTTTcatccaaagtgacttagtcatgtgtgtgtatgactccaaagtgacttagtcatgtgtgtgtatgactcCAGAGGGACTTGGTCATGCGTGTGTATATTCGTCGTACGGGTGGGTCCCTGGAATGGACTCCACTATCTGGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGCCACAGGACCTCACATCATTATGGATGATTGCACTAACAATAGAGACATGTAGAGGCATTCCGTTTGAATTCCAGACTTAACACTGCCTAGCAGAATGGTTTTATATGATCATGTACATAATAAACAAGAACACTGAAGATAATCCATGTTCGTTTCACCCCACTCTCAATTCCACTCAGATTTACCACAGATGGCTCTCAGTGCCAACATGTCACATCTGTGTAGACTGGTCTGAATGTGAATAGGTTTTGAgcttctgtttttaatttttaattttctTTTTTTCTGTAAAACTCAAACCAGTTTTTCTTTGATTTCTCCTATGTGATGGAACAGATGGATCAAACATGTCTTAGATGCTATTCAGggttatttgcaaattattattTTGTCAAGGATTGATCTCTTAAAACACACGTGGATAGCCTGGGCATGGCCAACTGTCTCGGTATCAGTACATGTGTCGACCCTTTTGATATGACTTCACTTCTTGATCATCATTTAGATAAAAGATCGAGAACGACAGCAGGCATTTTCATCTCTGTTGGAGAGCGCTAAACTGTTGTTTACCTTGTAAGGAGACCGGAGCGCTGTAACGTTTGATGAATATACAGCCTCTGCATTACCCTTTCACCACCACTAGAGAGCGGCGATGAGCAAATATTTATTGGAAGTGGGAGGTGGCAACAATTGTTTTATATTccaagagaaagggaggaggcaaCAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGAGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTAGAAACAAGGTGTGAGTGAAGAAGGACAGGGGCTTGTGGCATCAACAACAGGTGCATAGCAGCATTAATGGCGTATTGTATTATTACAGATTGACCAGCATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505295 lncRNA downstream 21610 65959651 ~ 65960031 (-) True G1319128
TU1505293 lncRNA downstream 28386 65952931 ~ 65953255 (-) True G1319126
TU1505285 lncRNA downstream 49341 65932088 ~ 65932300 (-) True G1319120
TU1505284 lncRNA downstream 50712 65930679 ~ 65930929 (-) True G1319119
TU1505281 lncRNA downstream 57393 65922192 ~ 65924248 (-) True G1319116
TU1505250 lncRNA upstream 816 65987246 ~ 65988552 (-) False LOC110500955
TU1505252 lncRNA upstream 882 65987312 ~ 65988552 (-) False LOC110500955
TU1505251 lncRNA upstream 993 65987423 ~ 65988552 (-) False LOC110500955
TU1505232 lncRNA upstream 3948 65990378 ~ 65993631 (-) True LOC110500955
TU1505315 lncRNA upstream 32639 66019069 ~ 66019359 (-) True G1319142
XM_036944978.1 mRNA downstream 2206 65901742 ~ 65979435 (-) True LOC110511371
XM_036944979.1 mRNA downstream 64234 65901742 ~ 65917407 (-) False LOC110511371
XM_036944977.1 mRNA downstream 82822 65892448 ~ 65898819 (-) True LOC110511373
XM_036944975.1 mRNA downstream 82824 65892448 ~ 65898817 (-) False LOC110511373
XM_036944976.1 mRNA downstream 82824 65892448 ~ 65898817 (-) False LOC110511373
XM_036944982.1 mRNA upstream 1502 65987932 ~ 66009466 (-) False LOC110500955
XM_036944984.1 mRNA upstream 1502 65987932 ~ 66009466 (-) False LOC110500955
XM_036944985.1 mRNA upstream 1502 65987932 ~ 66009466 (-) False LOC110500955
XM_036944987.1 mRNA upstream 1502 65987932 ~ 66009466 (-) False LOC110500955
XM_036944988.1 mRNA upstream 1502 65987932 ~ 66009466 (-) False LOC110500955
TU1505028 other downstream 508477 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 830241 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 830241 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1496323 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 1753966 64216504 ~ 64227675 (-) True G1318164
TU1505596 other upstream 292615 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 822017 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 869749 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 877411 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 974521 66960951 ~ 66961304 (-) True G1319847

Expression Profile