RNA id: XM_036944985.1


Basic Information

Item Value
RNA id XM_036944985.1
length 5006
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110500955
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65987246 ~ 66009466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGATTAATGTCCCCAGATGTGACGTTTTCTGCTTTCCTGTTTGCATTTTGTCTTGTTCAGGTCGATCGGTGGAGGAGGTGGTCTGGAAAATGGCTGACGGAGTTGATCACATCGACATCTACGCCGATGTTGAAGAGGATTTCAACCAGGAATCAGACTACCCTGCCCATGACCAGATAGACTTGTATGACGATGTTATCTCTCCTTCGGCCAATAATAACGGAGACGCACCTGAGGACCGGGACTACCTGGACAACCTACCCCCACCTGCTGGCTCCGAGGGGAACAAGAGCACCCCGCCCAACGTGGTTTACACGTACACTGGCAAGAGGATCGCCCTGTACATAGGCAATCTCACATGGTGGACAACAGACGAAGATTTGACAGACGCCATTGGATCAATAGGCATTAAGGATCTGCTGGAGATCAAGTTCTTTGAGAACAGAGCCAACGGCCAGAGTAAAGGGTTTGCCCTGGTGTGTGTGGGCTCAGACACGTCCTCTAGGAAGCTACTGGACCTGCTGGCTAAACGGGAGCTCCACGGACAGAACCCCATTGTTACCCCCTGCAACAAACAGTCCCTCAGCCAGTTCGAGATGCAGTCTCGGAAAAGCCCAGGTACATCGGGTGGGCAGATGTCCGGAGATGGGAAGGCGGGACCCCCCACCATGGGCCCCCGCGGTGGCTTCCCCATGGGCATGGGTAGGGGCCGAGGCCGCTTCCCTGGGCCTCCTGGCCCTGGAGGAGACCGCTTCCCTGGGCCTATCGGACCCGGAGGGCCCCCGCCACACTTCCCAGGGTCGGGGATGAGGCCACCTGAACTCATTAACCATAGACACCAAGAAGGCCACCTGATGGATATGAATTTCAATTGCTTCCCGCCGGGACGTGATGGGAATTGGCGACCCAGAGGTGGTATGCAGGGCCCACCTCGACCCCCTCCTGGCCCACTAGGTCCCCCTGGACCCCTAGGCCCCCCTCCCCCAGGACAGGGCCTCCCCCCTCCCATGCAAGGCCCCCCCAACCGTGGCGACCGCCCCCCACCCCCGGTCATGTTCCCCGGCCAGTTCGGCCAGCCCCCCATGGGTCCTCTCCCCCCTGGCCCTCCCCCACACGGCTTCGGCCCTCCTCctggccccccacccccccaacagGGCCCTCCACCCCCGGGTCATTTCCCCCCTCGCCCCCCCGGGCCCCTTGGACCACCTCTGGCCCTCGCTCCCCCACCACACATGACCGGGCCCCGACCTGGAGGCCCCCCACCGGCTCCCCATGTCAACCCAGCGTTCTTCCCTCCTCCTGGGGGTCCTAACAACATGGGGGGCCCTCCTGGAGGAGACGGCAGGGGCCCCAACGGGCCCAACGACCCCTATGGACGGCCACCTCCGTATGACCGGGGAGACTTCGGCCCCCCCGGCAGTAACCAGCGTCCCCCGCTAATCTGTGAGTTTGACCTCAGGGCCCCCCTGCCCCGCGGCTGCCCAGACCCCTGGATTAACGAGGGTTTGGTCGATCTGAAAAATGGCGGCCAGCACTTGCACAATGCGAGTGACCCAGGGGAGATGGAGTCGGCGCGGACACCGCTGAGCGAGGCAGAGTTTGAGGAGATCATGAACCGGAACCGAGCCATCTCCAGTAGTGCCATCTCTAGGGCGGTGTCAGATGCTAGCGCTGcTGACTATGGCAGTGCCATAGAGACTCTGGTGACAGCCATCTCTCTGATCAAGCAGTCCAAGGTCTCTGCTGACGACCGCTGTAAAGTTCTCATCAGCTCTCTACAGGACTGTCTCCACGGCATCGAGAACAAGTCCTACGGCTCTGCCTCCAGACGCGAGAGGTCGAGGGAGCGTGACCACAGCCGATCCCGGGAGAAGAGCCGGCGCCACAAGTCCCGTAGCCGCGACCGCCACGAGGACTACTACCGCGAACGcagccgggagagagagaggcaccgcGGGGACAGAGAACGAGAACGAGAAAGAGACCGTGAGAGGGAGTACCGACATCGTTAGCGGAGCCTACGGAAGAGGACAGGGACGAGGACGCCTCTTCACAACCAGCAGGCCCTACATCAGGATCGCCTTGTcaactagcccccccccccccccctctctgtctgtgtctccatggttaccaggggACTGACTACCTGGGAATCGCTCACAGCTGTGTAAGGTTATAAGTAGTGTTCTTTAAAATCATTCTcatggtataaaaaaaaaatactcaacagctatttttattttactgaaATTTTATTTGATGTGAACGAAAAAATGATTACCTACCTGTGTTGACAGGCTTCTTTCAAGCTTAGCGAAAATAACAAATGACTACATTTGCCTGCTCTATTCCAAAACGGACAACTTTTGACTGCTATAATGTGTACATTTTGTCAGGTTAAAGCTGGTTTTTACAGGGagggttttttgtttttttcatctTCATTTCCTCTCGTGCCCCTCCCTACTTTTCTCGTTTAGGATAATGTTTGTAAATGTCTCTGCTTTGAATATTAAAATAGATTCTGTGTTGTAATAAACTGTTTACTGGGGTTTTGGCACTTAATAATAATTTACATGTGTACGTTTTTGCCTTGCATACATTTTTCATGTTGAATTTTACGAAATAGTTATTTTTAAATTTACTCTCACTTAAGTTGCAAAGTTGTGCTGTTATTGACCAAATGAAGCACAGTTGACcaaaaaaattgtatttgtccCGATGCCCAGAATTAGTGAAATCTGACTGAATTTAGCGTAACTTCTTATGCATTGAATGATCATGTGACAGATATTTTAATCTTTGACTTATCAGTTTGTTCTAAAAGTTCTACTTAAAATGTAGCTACTTGTTGACAAACGTTTGTTTTTAGTCTCCATATACTTCTGTATGCCATTTGAATTCCAAAAGTGAAAATCCATGTCTTTGCTAAGTGATTTTAGAGGTATTCAGGACTTGATTATACTTGGGcaaaattttatttttttattttatttttcttgattttcattttttttcttcgtGTTACCAGGAAGTACATTCCAAGGGTTCATTACCCTAATATTAATGACACAAGTAGAACAAAATTATTGACTTGTATGGAATTATTTTAGTGATAGATCAACCTTCACAGATCTGGACAATACTACTACTGTGAAGCGAATTGGTCTCTTATCTGCAAACTTGTGCTCCAATTGGCTGGCTGATGTACTGCACTGATTTCTTATTGAGTTGCTTATCCCACTGGTTTAAGCCAGTGAGGTTTGtggtaacctggtcccagatctgtataTACTACTTCTTATTGAGTTGCTTATCCCACTGGTTTAAGCCAGTTAGGTTtgtggtagcctggtcccagatctgtataTATTTTGGCAGAGTCTTGACTACATTGAATAGCAATAACAATGCTAGACTAGTTGGCTAAAACGCATACAGACCTGAgcggtatactacaaagcaggaccAATGTGTTAGCCAGCTAATTTGCTtaaatattctgaaataacttttttttttaattggaaAAGAAGCTTGACTCCACAACCAAAAACACATATCTAAGTTCAGCTTTTTTAATGAGCCagaaaatcaaatgtaatttatcaaagttagctggctaatgcATTGATCCTGTTGTGTAGGATCCCCTTCTGGGACCAGGCCATGGGGCTGGGTGTAGTAAATGGTTGATTACAGTAGTAATGAGGGTCTGGGACAAGGCTGAGTGTTGTAAATGGATGGGGAATTACACTATAGTGAGGGTCTGGGACAAGGCTGAGGGGATGGGTGTTGTAAATGGCTGGGGATTACAGTAGTGGGGGTCTGGGTGTTGTAAATGGATGGGGATTACAGTAGTGAGGGTCTCGTGTAGTAAATGGATGGGGATTACAGTAGTGAGGGTCTCGGTGTAGTAAATGGATGGGGATTACAGTAGTGAGGGTCTGGGTATTGTAAACGGATGGGGATTACAGTAGTGAGGGTCTGGGTATTGTAAATGGATTAGGATTACAGTAGTGAGGATCTGGGTGTAGTAAATGGATGGGGATTACAGTAGTAAGAGTATTCAAGTGAGGTGTCCATTTTGTGAAGCATGAGAGCACAATCCTTCCCTGGCTTCTAGGGGTCTGTGCACTGACTGGTCTGCCAGATTAAAATAACTGATATTGATGCCTGTTTTAAGGCGGTAAAACCTACCTCTCTACTCCCATGTATTTTCTAAATGGCCCTGATAGACATTAGTGGTGCTCTCCTGCTTGCATTGTGTTGACACTCTGAAGATAGATATTTAGGTGGCTATTGTGGCTTCGAATCATTCACTGAAACAACTGCTTCAGTCAActaaacattatttttttaaattttattggTTAGACTTTACATCCAACTATTGGCACATAAATATCTCCAAGTTTTTAATCAATATTGCCCACTAGCTACAAAGAGCATTTTGAGGACTTAACAATGTGTTTGACATGGTATGTATGTTATTGAAAGTACTCCTTCAGGTAAAGTTCGCATGACAGACACTTCCGGTTTTTTTTTATACGTGGGACTTTTGTATTGCATTTTATTGTATAAATGCACTGAGATATTGAATATGGTGTAAAGCATTCATAATGCTCTATGTAGCTAGTTTACCATGTTTATTGTGCTAATGGACAGGTTATCAACGCTTTGTTACCTATTCGCAGATCATTACGAATAGCTTTCCAGCCCCAACGTCTTTTCAAACCGGTTGAATATTTGAGTGGAGCTGGTTTGATACGTCGATACTGTACATATATACGCAGTCGACAAGTGTTACCCATGCTCAATTAGTGTTGTCATTTTGTACATATAATAATTCATCCATCTTAGATATTACCTTCAAATACTTTTTACAATTAGATCAAACTGATCAATTTCTCTCTCGGACGTGTTCAGGAAATtgaacttttttttaaaggtgcaCTGTCTTGTTTTGAGTGGTTTCAATAAACTAGTTTTCTCCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505295 lncRNA downstream 27901 65959651 ~ 65960031 (-) True G1319128
TU1505293 lncRNA downstream 34677 65952931 ~ 65953255 (-) True G1319126
TU1505285 lncRNA downstream 55632 65932088 ~ 65932300 (-) True G1319120
TU1505284 lncRNA downstream 57003 65930679 ~ 65930929 (-) True G1319119
TU1505281 lncRNA downstream 63684 65922192 ~ 65924248 (-) True G1319116
TU1505315 lncRNA upstream 9603 66019069 ~ 66019359 (-) True G1319142
TU1505386 lncRNA upstream 49007 66058473 ~ 66059044 (-) True G1319188
TU1505388 lncRNA upstream 49824 66059290 ~ 66060760 (-) False G1319189
TU1505387 lncRNA upstream 50714 66060180 ~ 66060760 (-) True G1319189
TU1505413 lncRNA upstream 105710 66115176 ~ 66115643 (-) True G1319213
XM_036944981.1 mRNA downstream 1497 65981641 ~ 65986435 (-) True LOC110499707
XM_036944980.1 mRNA downstream 1502 65981641 ~ 65986430 (-) False LOC110499707
XM_036944978.1 mRNA downstream 8497 65901742 ~ 65979435 (-) True LOC110511371
XM_036944979.1 mRNA downstream 70525 65901742 ~ 65917407 (-) False LOC110511371
XM_036944977.1 mRNA downstream 89113 65892448 ~ 65898819 (-) True LOC110511373
XM_036944993.1 mRNA upstream 23595 66033061 ~ 66047898 (-) False LOC110499708
XM_036944994.1 mRNA upstream 23595 66033061 ~ 66047899 (-) True LOC110499708
XR_005036194.1 mRNA upstream 403869 66413335 ~ 66416152 (-) False LOC110519161
XM_036945007.1 mRNA upstream 407988 66417454 ~ 66513524 (-) False LOC118938831
XM_036945008.1 mRNA upstream 407988 66417454 ~ 66513524 (-) True LOC118938831
TU1505028 other downstream 514768 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 836532 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 836532 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1502614 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 1760257 64216504 ~ 64227675 (-) True G1318164
TU1505596 other upstream 269579 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 798981 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 846713 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 854375 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 951485 66960951 ~ 66961304 (-) True G1319847

Expression Profile