RNA id: TCONS_00043900


Basic Information

Item Value
RNA id TCONS_00043900
length 940
RNA type processed_transcript
GC content 0.41
exon number 2
gene id XLOC_022239
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17044294 ~ 17046384 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCATTGACAAATGCTGTTTTCAGGGGAATTCCAGTGTCTTTGTCAAGATCTTCACTTGTATTCAGACCAGAATGTTCCGTCCATATTTGTCTGAAGCGTTCTTCAAACTCTGCAACACTTTCTCCAGTTTTCTGCATGCATGAGGTAATTCTTGCCCAATTGACCTCTGCAGGTTTCAGTTCAAACAAGAAGTTTTTTATGGCTTCCCATCCATCCTCTATGTTTTCTTGTGATTCACCAATCCTTCTTTCAACACTTTCTGTGAGTCTCTTTTGGTCACTgtctcttagggtGACATTAAGAATCATCACACCGTCTAGTGGATGTAAAATGTAGATTTTCTGCAGTCGTTGAAGAAACTGCCAAACCTTTCGTGGTTGTTTGTATACATCTGGCAGCTCTTTTGACCATTTGTCAACTTGCTCTGGAGTAGCTGGATGGTATGTCCTGTATGGAACATACTTCTTTACCACTTTTGTCACAGTGCGAGTTCGTCTCTCTCCATTGTCTTCATAGCCCTCCTCATTGTCAATTTCAACGTTAGTCCTTCTGTGTTTGACAATCACAGGAGCTAATCTAATCTTTGAGTTCACTGGGTCATGAACACAGGTGTTGATGGAAAGATCAGCCTCACTGTCAACAAAGCTGCTTGAAGATCTTGATTCCAGCTGTTTAGAGATCAAAGTCAATAGTTTGTTGTTTTCCTTTTCCAGTCTTTCTTTATCCTTCTTTAAGTTTTGCAATTGTTCAGCCAGTGCTCGAACTTTAGCTTTCTCCGCTTTGTTCTCACGTTCCAATCTGTCAATCTCACACTTATGCTCATGTTGAAGAATTTGCTTAACCAAAATCACAGACAATCCATCCTTCTTGGTGGTTGTGCATAAGCGCTGTGTCTTTCCATAAGCCCTTTTAATGTCCGGCAATGCCCATAATCCACT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000137682

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043892 lncRNA downstream 81754 16961269 ~ 16962540 (-) False XLOC_022237
TCONS_00044724 lncRNA downstream 191347 16850836 ~ 16852947 (-) True XLOC_022235
TCONS_00043885 lncRNA downstream 307142 16735911 ~ 16737152 (-) True XLOC_022232
TCONS_00043884 lncRNA downstream 310365 16730519 ~ 16733929 (-) False XLOC_022232
TCONS_00044979 lncRNA downstream 335164 16696124 ~ 16709130 (-) False XLOC_022231
TCONS_00043902 lncRNA upstream 307769 17354153 ~ 17355702 (-) True XLOC_022241
TCONS_00043904 lncRNA upstream 381587 17427971 ~ 17429764 (-) True XLOC_022242
TCONS_00043907 lncRNA upstream 386214 17432598 ~ 17439938 (-) False XLOC_022243
TCONS_00043914 lncRNA upstream 400539 17446923 ~ 17450731 (-) True XLOC_022243
TCONS_00043919 lncRNA upstream 611610 17657994 ~ 17663102 (-) False XLOC_022247
TCONS_00043897 mRNA downstream 39511 16983363 ~ 17004783 (-) False XLOC_022237
TCONS_00043896 mRNA downstream 40761 16981929 ~ 17003533 (-) False XLOC_022237
TCONS_00043895 mRNA downstream 62309 16979462 ~ 16981985 (-) False XLOC_022237
TCONS_00043890 mRNA downstream 62314 16961269 ~ 16981980 (-) False XLOC_022237
TCONS_00043894 mRNA downstream 62395 16978911 ~ 16981899 (-) False XLOC_022237
TCONS_00043903 mRNA upstream 381454 17427838 ~ 17429775 (-) False XLOC_022242
TCONS_00043905 mRNA upstream 384961 17431345 ~ 17450805 (-) False XLOC_022243
TCONS_00043906 mRNA upstream 384964 17431348 ~ 17450811 (-) False XLOC_022243
TCONS_00043908 mRNA upstream 386345 17432729 ~ 17450761 (-) False XLOC_022243
TCONS_00043909 mRNA upstream 386368 17432752 ~ 17450784 (-) False XLOC_022243
TCONS_00043898 other downstream 59700 16983777 ~ 16984594 (-) True XLOC_022237
TCONS_00043893 other downstream 65379 16977930 ~ 16978915 (-) False XLOC_022237
TCONS_00043889 other downstream 80189 16961269 ~ 16964105 (-) False XLOC_022237
TCONS_00043886 other downstream 297871 16744782 ~ 16746423 (-) True XLOC_022233
TCONS_00043880 other downstream 335063 16696410 ~ 16709231 (-) False XLOC_022231
TCONS_00043901 other upstream 129720 17176104 ~ 17176218 (-) True XLOC_022240
TCONS_00043921 other upstream 636434 17682818 ~ 17682932 (-) True XLOC_022248
TCONS_00043939 other upstream 1016789 18063173 ~ 18063299 (-) True XLOC_022255
TCONS_00043945 other upstream 1336072 18382456 ~ 18382551 (-) True XLOC_022260
TCONS_00043958 other upstream 1563632 18610016 ~ 18611010 (-) True XLOC_022266

Expression Profile

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