RNA id: XM_036944994.1


Basic Information

Item Value
RNA id XM_036944994.1
length 2488
RNA type mRNA
GC content 0.52
exon number 10
gene id LOC110499708
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66033061 ~ 66047899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGACAGCCATAGCCAGGAGCGCACTGGCAgctggactgacagacagacacagacagacaaccagcTAAATGTGGCCAGGGCGGTCACCTGATGATTGCTCAATCTTGACTCACGGTTCAGGAATACACTATATTACACCTAAAGCAACAACAAGCAATGTGATTTTAGATTTGGTACAAAAGATATCAATTAAAGTCAGCTACATTCACAACCGGTAAGGACAAGGGAGTGTCTGTCAACTAAGTGTAAGTTGGATGACTAGGTCGTTTTTCTGCAGTGATTGAAGGAAGATGACGGTGACCTACTCCAGTAAAGTCGCCAACGCCACGTTCTTCGGTTTCCATAGACTTCTACTGCGATGGAGAGGCAGCATCTACAAACTGCTTTATCGGGAGTTTATAGTCTTTGTACTGTTATATACCTTGGTGAGCCTCGTTTACAGACTCGCCCTCTCAGACCCTGAAAAGCGTTTCTTTGAAAAGTTGGCTCTTCACTGTAACAAGTATGCAGAACAGATTCCAGTCACGTTTGTGCTCGGTTTCTACGTCACCCTGGTGGTCAACCGTTGGTGGAACCAGTTCGTGAATCTGCCTTGGCCCGACCGCCTCATGTTCCTGGTCTCCAGCTGTGTTCACGGCCACGACGAGCAGGGCCGCCTCCTCAGACGCACGCTGATGCGCTACGTCAATCTCACCTCACTGCTCATCTTCCGCTCCGTCAGCACCGCCGTCTGTAAGAGGTTCCCCACCATGGAGCATGTGGTGGAGGCAGgCTTCATGACTCCAGAAGAGAGGAAGATCTTTGATGCTGTCAAGTCTCCCCACCTGAAGTACTGGATCCCTGTGGTGTGGTTTTCTAACATGGCGTCCAGGGCTCGGACGGAGGGGCGCATCAAGGACAGCGTGGACCTGCAGACCATCCTCAACGAGATGAACACATTCAGGACTTGGTGCTCTACTCTATTTGGTTATGACTGGGTTGGGATTCCTCTCGTCTACACACAGgtaGTAACCCTGGCCGTCTACACCTTCATCTTTGCCTGTATTATTGGTAGACAGTTCTTGGACCCAGCTCAGGGTTACCCAGGTCATGACCAGGACTTTTACGTTCCCATCTTCACTATGCTACAGTTCTTCTTCTACTCTGGCTGGCTCAagGTTGCTGAGCAGCTCATTAATCCATTTGGAGAGGATGATGACGACTTCGAGGCTAACTGGTGTATCGACAGAAATCTGCAGGTGTCGTTGATTGCGGTGGATGAGATGCACATGAACTTCCCTCCGATGACTAAAGACATTTACTGGAACGACTCTGAGGCTCTGCCTCCCTACACCCTGGCTGCAGCCGACTACTGCATACCCTCCTTCCTCGGATCCACcagagagttggaTCTATCGGGCATTTTTCAGTTCGGAGAGGCAGACAAAATGGACATTCACAGACAGGACAGCCACAACAGCAATCACAACTTCCGTCATGGTCGTCAAACGTCAGTCCTGGGGCACGTGCGTAGACTTCTCAGTGTCCAGGATCCCCCAGAGCTCGTCCCTCCTCGGCCCTCCTTCAAACGTCACAGCAGTGAGGCCTTCTTCCCCTTCAGATCTGACTCCCATGACTACCCTGGATCAGACGACCAGGCCTCCCCAGGACCTGATCACTCTCTGTTCCCCAGACCCAACCTCTTTAACTCCCATAACCCCCTCTCGACCAACCACCCTCTGGATACGCTACGGGAGGTTAGTAGTACTCTTTCTTCCCTGGACACTGAGCCCCGTACGCCGTCCTTCACAGACCTGCCTCAGTGGGTGGTAAGTCCACCTGCTTCTTCTGATGATCATGGGGATATTGGTTATGGGGGTGATGGAGGGACGTGTGGGGCGTTATCTGGGGCTCCACAACCCCTGAATCATATAGAGGCCTTCTCCCAACAGACAGGGCATGAGCAGGCCTCAAGTAAGCCTGGGACTCCAGTAGATCTGTCCCCCATTGTGGAGGCTCCGGCCCTGAACACGAATCAGGGCAACAGCTGTACCCAACCGAGGCCCAAGAAGTTGAGCTGGAACGTCCCCAAAGACTGGTGTAAGCCACAGAGACGTCAGCTGTCCTTCCAGTTCTCCAGACAGGGCTCAAAGAGCTCCCTGCACAGCCTGCCTAGTCCTCAAGGcctagggaggaggagaggccgAAACACTTCCACAGCCCTCCACTTTCCTGCTGAGCCTGCCCAGTTCCAAGCACTGCAAGTCCCCGAGACAGACATTCTGGAGTCCAATGGTCATGAGAGTGACAAGAAGGACACCAATGACAGCCAAGAGAACAAGGACAAGTCACAATCGGAGAAGTCGTAATGTTCTTCTGACATACAGTCCATATCGACCTGCTGTACGAGTCACTTAACAGGCTCTCTAAGGGTGTACCCAGCATTATTATAATTGACACCCTAATAAACATCAAACGTTTGTTTTATAATAAAATATAATGTATTCA

Function

GO: NA

KEGG:

id description
K13880 BEST3, VMD2L3; bestrophin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505315 lncRNA downstream 13702 66019069 ~ 66019359 (-) True G1319142
TU1505232 lncRNA downstream 39430 65990378 ~ 65993631 (-) True LOC110500955
TU1505250 lncRNA downstream 44509 65987246 ~ 65988552 (-) False LOC110500955
TU1505386 lncRNA upstream 10574 66058473 ~ 66059044 (-) True G1319188
TU1505388 lncRNA upstream 11391 66059290 ~ 66060760 (-) False G1319189
TU1505387 lncRNA upstream 12281 66060180 ~ 66060760 (-) True G1319189
TU1505413 lncRNA upstream 67277 66115176 ~ 66115643 (-) True G1319213
TU1505415 lncRNA upstream 69518 66117417 ~ 66118092 (-) True G1319215
XM_036944988.1 mRNA downstream 23595 65987932 ~ 66009466 (-) False LOC110500955
XR_005036194.1 mRNA upstream 365436 66413335 ~ 66416152 (-) False LOC110519161
XM_036945007.1 mRNA upstream 369555 66417454 ~ 66513524 (-) False LOC118938831
XM_036945008.1 mRNA upstream 369555 66417454 ~ 66513524 (-) True LOC118938831
XM_036945009.1 mRNA upstream 471819 66519718 ~ 66553585 (-) False LOC110515929
XM_036945556.1 mRNA upstream 517019 66564918 ~ 66630601 (-) False LOC110519130
TU1505028 other downstream 559897 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 881661 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 881661 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1547743 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 1805386 64216504 ~ 64227675 (-) True G1318164
TU1505596 other upstream 231146 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 760548 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 808280 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 815942 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 913052 66960951 ~ 66961304 (-) True G1319847

Expression Profile