RNA id: XR_005036194.1


Basic Information

Item Value
RNA id XR_005036194.1
length 2786
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC110519161
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66413335 ~ 66416251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAATTCccctcttcacaaaaaaatgccgGTGCTCGTCATTGCTTTTGCACCAATTGACCCCACACAGCAAGTAAGGCAATGTATACAGTATTATGTAGAGTAGCGCACCAGTCTCTCAGGCTTGACCCTCTCACCCCTGTCCTCCCCTATAAGCCTAAAGGTCATATCATAAAGAGATTGTCTCCAGATAATAGAGTACAGAAACATCAACTCTCTCCATCTGTTCTCCTGCCTGCTGGGAGTTGAGTGGATCTAATAGTGTGGCATTAAGCTCCACTGTAGATTCCTCAAAAGTTTTTCATTACAGAAATCTATATCAATCCCCTTCCCTCCTGTCAAACTAATGCGTTGTTAGATCCCCAATGACCCTCTGGAACACATCTCTCTGGGTTTCACCAGAGAATGGCTGGTGCCCATACAGCAGCTAAAACTTTATGTGACGCGCTTAGCTACCTGATGAATATTCTCCCAGCGTTTCTGTTTCCCTGTAACATCTCTACTACCTCGCTCACCAACCAACAGTTGACCTGCAGGGGAAACCTTCTAACCCAGGCCTTtagaaagagacaaggagaggaggggcagaggTGTTGGAGGCAAATCAGAGGAATTAACTGTCTTTAACAGAGAAGTCATGGTGTAAGCCTGCCGTATGTATAATTTACAGTATGTACCATTTACAGTATGTATAATTTACAGTATGTATCATTTACAGTATGTATCATTTACAGTATGTATCATTTACAGTAGGTATCATTTACAGTATGTACCATTTACAGTATGTATCATTTACAGTAGGTATCATTTACAGTATGTACCATTTACAGTATGTACCATTTACAGTATGTATCATTTACAGTAGGTATCATTTACAGTATGTACCATTTACAGTATGTGTCTTTTACAGTTGGTATAATTCCACATGACCTATGGGATGGTTGTGCATCTGGAAAATGTCCCCTAGTCTAGAATGTTCCTTAGCCTAGAATGTTCCCTAGTCTAGAATGTTCCCTAGTCTAGAATGTTCCCTAGTCTAGAATGTTCCCTAGCCTAGAATGTTCCCTAGCCTGGAATGTTCCCTAGCCTAGAATGTTCCCTAGCCTAGAATGTTCCCTAGCCTAGAATGTTCCGTAGCCTAGAATGTTACCTAGCCTAGTATGTTCGCTAGCCTAATTGTATTCCCTAGCCTAGAATGTTACCTAGCCTAGTATGTTTCCTAGCCTATTGTATTCCCTAGCCTAGAATGTTCCCTAGCCTAGTATGTTCCCTAGCCTAGAATGTTCCCTAGCCTAGAATGTTCCCTAGCCTAGAATGTTCCCTAGCCTAGTATGTTCCCTAGCCTAGTATGTTCCCTAGCCTAGAATCTTCCCTAGCCTAGAATGTTCCCTAGCCTAGTATGTTCCCTAGCCTAGTATGTTCCCTAGCCTAGAATGTTCCCTAGCCTAGAATGTTCCCTTTCATTTAAAAGTAGAGAATTATGTTGTTTATTTTCTTTTCATTTGTTTGTTTCTTCATAATCATACTGCTGGCAATGGAGGAGAAAGGTGTTGATACATGTTCCTAATTGGTTTCCAACTCTGTTTCCGGTCTCTTGTTAATACGATGAGGTAATCTGCCAACTCATTACGTTCAGCACATAGTTAACTATGAACCGTTCATCCCTCTGGAGAACTAAGGTTGTATTAATTAATCACTGATGTAGGCAGGCGTCCCAAAAGgtaaggcaccctattccctatatagtgcactactattgaccagagcccatagggctgtggttaaaagtagtgtaatatgtagggaatagggtgccatttggagcaCAGAACCATAGAGTGATCATAGTAGTATCTCTCTAGAGCAGTGTCTTACTCTGTGAGCATACTGGCAAAATAAGAAAGCCTTGTCCAAGCCAGAGTGAACCAAAGGACAGGAGCCTGCCTCCTGTTTCTGAAGAGTGAGGCAACTTAATGTACTAGTACACCCCCTTGTCCAAGCCAGAGTGAACCAAAGGGCAGGagcctgtctcctgtttctgaaGAGTGAGGCAACTTAATGTACTAGTACACCCCCTTGTCCAAGCCAGAGCGAACCAAAGGGCAGGagcctgtctcctgtttctgaaGAGTGAGGCAACTTAATGTACTAGTActacccctggacaggacactagtctgtctgactgtactggtatatattactatactagtacaccccctggacaggacactagtctgtctgactATACTGGTATATATTAATGTActagtacaccccctggacaagacactagtctgtctgactATACTGGTATATATTAATGTACTAGTACactccctggacaggacactagtctgtctgactATACTGGTATAGATTACTGTACTAGTActacccctggacaggacactactCTGTCTGACTATACTGGTATAGAGTGTATATTTGATTGCGTTAACATATCGTGAATACCAGAGGTGTCACAACACAACAACTGTCACGTGACCTATACCTACAGGGAAGGAGCTGTGCTTCTCTGTCGTATTGTGTTTGCACTGGATCAATGTGAACGAATGTAAACAATGTTATGTTGTAAATGTGCCTGGTTTTGTACCCCATGTTTATCCATGTGTATTGGTTGATATGATAAGCTATGTGTTATGTATGTAAGTTAAAAAAAAAGCTAAACATTGTTTTGAATATATGATCACATTAATAATACCGAGAATATGCAACCATGTTAAATATGCTAATCATGTATAATAAAATAAGAATATAGATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505865 lncRNA downstream 196 66411949 ~ 66413139 (-) True G1319564
TU1505841 lncRNA downstream 1430 66411032 ~ 66411905 (-) True G1319555
TU1505840 lncRNA downstream 2607 66410399 ~ 66410728 (-) True G1319554
TU1505655 lncRNA downstream 3836 66409233 ~ 66409499 (-) True G1319407
TU1505654 lncRNA downstream 8480 66403537 ~ 66404855 (-) True G1319406
TU1505867 lncRNA upstream 11642 66427794 ~ 66428865 (-) True G1319566
TU1505891 lncRNA upstream 61661 66477813 ~ 66478369 (-) True G1319589
TU1505899 lncRNA upstream 91658 66507810 ~ 66508351 (-) True G1319595
TU1505857 lncRNA upstream 98127 66514279 ~ 66516219 (-) False G1319560
TU1505858 lncRNA upstream 98127 66514279 ~ 66516219 (-) False G1319560
XM_036944994.1 mRNA downstream 365436 66033061 ~ 66047899 (-) True LOC110499708
XM_036944993.1 mRNA downstream 365437 66033061 ~ 66047898 (-) False LOC110499708
XM_036944988.1 mRNA downstream 403869 65987932 ~ 66009466 (-) False LOC110500955
XM_036945007.1 mRNA upstream 1302 66417454 ~ 66513524 (-) False LOC118938831
XM_036945008.1 mRNA upstream 1302 66417454 ~ 66513524 (-) True LOC118938831
XM_036945009.1 mRNA upstream 103566 66519718 ~ 66553585 (-) False LOC110515929
XM_036945556.1 mRNA upstream 148766 66564918 ~ 66630601 (-) False LOC110519130
XM_036945010.1 mRNA upstream 239046 66655198 ~ 66713032 (-) False LOC110501008
TU1505596 other downstream 131227 66279045 ~ 66282108 (-) True G1319357
TU1505028 other downstream 940171 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 1261935 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 1261935 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1928017 64482827 ~ 64485318 (-) False LOC110499867
TU1506125 other upstream 392295 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 440027 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 447689 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 544799 66960951 ~ 66961304 (-) True G1319847
TU1506555 other upstream 664629 67080781 ~ 67084605 (-) True LOC110511902

Expression Profile