RNA id: TU1505845


Basic Information

Item Value
RNA id TU1505845
length 2667
lncRNA type sense_over
GC content 0.42
exon number 3
gene id LOC110519161
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66413335 ~ 66416251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGTATCAGATGGAACACATTCTGACTCCTCCCAGTAGTATCAGATGGAACACATTCTAACTCCTCCCAGTAGCAGGAATATTGCATTTCCTGTTTAGTCCAATTCccctcttcacaaaaaaatgccgGTGCTCGTCATTGCTTTTGCACCAATTGACCCCACACAGCAAGTAAGGCAATGTATACAGTATTATGTAGAGTAGCGCACCAGTCTCTCAGGCTTGACCCTCTCACCCCTGTCCTCCCCTATAAGCCTAAAGGTCATATCATAAAGAGATTGTCTCCAGATAATAGAGTACAGAAACATCAACTCTCTCCATCTGTTCTCCTGCCTGCTGGGAGTTGAGTGGATCTAATAGTGTGGCATTAAGCTCCACTGTAGATTCCTCAAAAGTTTTTCATTACAGAAATCTATATCAATCCCCTTCCCTCCTGTCAAACTAATGCGTTGTTAGATCCCCAATGACCCTCTGGAACACATCTCTCTGGGTTTCACCAGAGAATGGCTGGTGCCCATACAGCAGCTAAAACTTTATGTGACGCGCTTAGCTACCTGATGAATATTCTCCCAGCGTTTCTGTTTCCCTGTAACATCTCTACTACCTCGCTCACCAACCAACAGTTGACCTGCAGGGGAAACCTTCTAACCCAGGCCTTtagaaagagacaaggagaggaggggcagaggTGTTGGAGGCAAATCAGAGGAATTAACTGTCTTTAACAGAGAAGTCATGGTGTAAGCCTGCCGTATGTATAATTTACAGTATGTACCATTTACAGTATGTATAATTTACAGTATGTATCATTTACAGTATGTATCATTTACAGTATGTACCATTTACAGTATGTATCATTTACAGTAGGTATCATTTACAGTATGTACCATTTACAGTATGTACCATTTACAGTATGTATCATTTACAGTAGGTATCATTTACAGTATGTACCATTTACAGTATGTGTCTTTTACAGTTGGTATAATTCCACATGACCTATGGGATGGTTGTGCATCTGGAAAATGTCCCCTAGTCTAGAATGTTCCTTAGCCTAGAATGTTCCCTAGTCTAGAATGTTCCCTAGTCTAGAATGTTCCCTAGTCTAGAATGTTCCCTAGCCTAGAATGTTCCCTAGCCTGGAATGTTCCCTAGCCTAGAATGTTCCCTAGCCTAGAATGTTCCCTAGCCTAGAATGTTCCGTAGCCTAGAATGTTACCTAGCCTAGTATGTTCGCTAGCCTAATTGTATTCCCTAGCCTAGAATGTTACCTAGCCTAGTATGTTTCCTAGCCTATTGTATTCCCTAGCCTAGAATGTTCCCTAGCCTAGTATGTTCCCTAGCCTAGAATGTTCCCTAGCCTAGAATGTTCCCTTTCATTTAAAAGTAGAGAATTATGTTGTTTATTTTCTTTTCATTTGTTTGTTTCTTCATAATCATACTGCTGGCAATGGAGGAGAAAGGTGTTGATACATGTTCCTAATTGGTTTCCAACTCTGTTTCCGGTCTCTTGTTAATACGATGAGGTAATCTGCCAACTCATTACGTTCAGCACATAGTTAACTATGAACCGTTCATCCCTCTGGAGAACTAAGGTTGTATTAATTAATCACTGATGTAGGCAGGCGTCCCAAAAGgtaaggcaccctattccctatatagtgcactactattgaccagagcccatagggctgtggttaaaagtagtgtaatatgtagggaatagggtgccatttggagcaCAGAACCATAGAGTGATCATAGTAGTATCTCTCTAGAGCAGTGTCTTACTCTGTGAGCATACTGGCAAAATAAGAAAGCCTTGTCCAAGCCAGAGTGAACCAAAGGACAGGAGCCTGCCTCCTGTTTCTGAAGAGTGAGGCAACTTAATGTACTAGTACACCCCCTTGTCCAAGCCAGAGTGAACCAAAGGGCAGGagcctgtctcctgtttctgaaGAGTGAGGCAACTTAATGTACTAGTACACCCCCTTGTCCAAGCCAGAGCGAACCAAAGGGCAGGagcctgtctcctgtttctgaaGAGTGAGGCAACTTAATGTACTAGTActacccctggacaggacactagtctgtctgactgtactggtatatattactatactagtacaccccctggacaggacactagtctgtctgactATACTGGTATATATTAATGTActagtacaccccctggacaagacactagtctgtctgactATACTGGTATATATTAATGTACTAGTACactccctggacaggacactagtctgtctgactATACTGGTATAGATTACTGTACTAGTActacccctggacaggacactactCTGTCTGACTATACTGGTATAGAGTGTATATTTGATTGCGTTAACATATCGTGAATACCAGAGGTGTCACAACACAACAACTGTCACGTGACCTATACCTACAGGGAAGGAGCTGTGCTTCTCTGTCGTATTGTGTTTGCACTGGATCAATGTGAACGAATGTAAACAATGTTATGTTGTAAATGTGCCTGGTTTTGTACCCCATGTTTATCCATGTGTATTGGTTGATATGATAAGCTATGTGTTATGTATGTAAGTTAAAAAAAAAGCTAAACATTGTTTTGAATATATGATCACATTAATAATACCGAGAATATGCAACCATGTTAAATATGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505865 lncRNA downstream 229 66411949 ~ 66413139 (-) True G1319564
TU1505841 lncRNA downstream 1463 66411032 ~ 66411905 (-) True G1319555
TU1505840 lncRNA downstream 2640 66410399 ~ 66410728 (-) True G1319554
TU1505655 lncRNA downstream 3869 66409233 ~ 66409499 (-) True G1319407
TU1505654 lncRNA downstream 8513 66403537 ~ 66404855 (-) True G1319406
TU1505867 lncRNA upstream 11543 66427794 ~ 66428865 (-) True G1319566
TU1505891 lncRNA upstream 61562 66477813 ~ 66478369 (-) True G1319589
TU1505899 lncRNA upstream 91559 66507810 ~ 66508351 (-) True G1319595
TU1505857 lncRNA upstream 98028 66514279 ~ 66516219 (-) False G1319560
TU1505858 lncRNA upstream 98028 66514279 ~ 66516219 (-) False G1319560
XM_036944994.1 mRNA downstream 365469 66033061 ~ 66047899 (-) True LOC110499708
XM_036944993.1 mRNA downstream 365470 66033061 ~ 66047898 (-) False LOC110499708
XM_036944990.1 mRNA downstream 403902 65987932 ~ 66009466 (-) False LOC110500955
XM_036945007.1 mRNA upstream 1203 66417454 ~ 66513524 (-) False LOC118938831
XM_036945008.1 mRNA upstream 1203 66417454 ~ 66513524 (-) True LOC118938831
XM_036945009.1 mRNA upstream 103467 66519718 ~ 66553585 (-) False LOC110515929
XM_036945556.1 mRNA upstream 148667 66564918 ~ 66630601 (-) False LOC110519130
XM_036945010.1 mRNA upstream 238947 66655198 ~ 66713032 (-) False LOC110501008
TU1505596 other downstream 131260 66279045 ~ 66282108 (-) True G1319357
TU1505028 other downstream 940204 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 1261968 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 1261968 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1928050 64482827 ~ 64485318 (-) False LOC110499867
TU1506125 other upstream 392196 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 439928 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 447590 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 544700 66960951 ~ 66961304 (-) True G1319847
TU1506555 other upstream 664530 67080781 ~ 67084605 (-) True LOC110511902

Expression Profile