RNA id: XM_036945007.1


Basic Information

Item Value
RNA id XM_036945007.1
length 7984
RNA type mRNA
GC content 0.53
exon number 32
gene id LOC118938831
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66417454 ~ 66513524 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGACTTTtgatgccctctctctctccaaggggGAAAgtttagagacacatattttaaAACACATctataaaaaaaaatttaaaaaagtttTTTATTGAAATTTTACTTATAGAGAATGAAGTATCAACTGCGCACTATTTGACTCATACCCACCAAAGTTCTATATCGTAGTCTAAGGGGGCTCTGGTTGAACGCTGTGGAAGCTTGGAGCTGGAGTCATACAAACATTCTACTGGTTGAGGATATCCTGTAAGGACTCAAGTATCTCACTGTTTGGAGGAGGTGGAACTGGATGGAAGTGTCCGACGTGAAACAGTGATCAGTTGTCTTCACCCAACGTCTACTAGGAGTTCCTCACTACTGAATTATCTGAAGAAGAAAAACTATTCTGGGTGATTTTGGAACATTGCAACTGCAAAGGCTTCACAGGACTTTAGCTTTACTCAAGTGGATGAGGCAGTTCTACTGATTTAGCTGTACTCAGGTGGATGAGGCAGTTCTACTGATTTAGCTGTACTCAAGTGGATGAGGCAGTTCTACTGATTTAGTTGTACTCAAGTGGATGAGGCAGTTCTATTGATTTAGCTGTACTCAAGTGGATGAGGCAGTTCTACTGATTTAGCTGTACTCAAGTGGATGAGGCAGTTCTACTGATTTAGCTGTACTCAAGTGGATGAGGCAGTTCTACTGATTTAGCTGTACTCAAGTGGATGAGGCAGTTCTACTGATTTAGCTGTACTCAAGTGGATGAGGCAGTTCTACTGATTGCCGTATATCTTTTTTGGAGTATGGTTTTGGATCATGCTCTTTTGGATTTAAATTTTTGGGGACGTGAATAATGTATAAATCAACAATCGAAATGCTGAAATGTAACaggttttttttaacactttgtGTGGCATCAGGGATTCTCTTGTGTGTATCCGCCATCGCCGAAGAGCAGAAATGCAGCATAAACGTGACCGAGGCTGACAGCGGTCTGGAATCTATAACGTTGAGACTGACTACGGAGGGACAGCAGTGTCACTTCACTGTGTTATCTGTGGACAGTAGCTCTGTAGTAACACACTGTGTGGAGGAACCGAAGGAAAACGACACGTTTCAATGCCAGGTAGTCAGTTTAGAACCCGGAACATTGTACGCCCTGCAAATCATGTCCACGACAGATGAACAACGGGCCAATGTCACCCTGCAGACCAGTCCATCGACAGTCAGTGGCCTACAGGTGTCTGGGACATCAGACAGCCTGGGAGTTTCCTGGCAGCCTGGCCCAGGGAGGACTGAGCGCTTCAGGCTACTGCTCACCGACCGAGTGGGTGTGGTGAGGAACCTGACTCTGGAGAGCACCGCTAAAGACTACACTGTCACCGACCTGGTGCCAGGGCGCGTGTATAACATCACCATGGTGACGGAGGCAGGGGGACGCCAGAGTACCACCTCAAGACAAATACAGACGGtgCCCTATGCCGTCTCCAACCTGAAGCTAGAGAACAATAACACCCAGGACAGTTTGAGAGCATCATGGAGTCAACCCCAGGGTGATGTGGACTCCATAGTGGTGACCCTGTCCTCGTCTGGAACCACCCCTCTGGAGAAGACCCTGTCATCTGACACCACAAAGGCCCACTTCCACCAGCTGACACCCGGACGGACCTATCAGGTGTCTGTCGCCACCAAGAGCGGAGAGCTCTCCAACCAATCAACTGCCTCGGCCAACACAGTCCCAGGTAAAGTGTCCCAGCTCTCTATGGAGGCGCTGGATGACTCCAACTCTCTGAAGGTGATGTGGGCTCCCCCTGGTGGAGACTGGGATAAGTACAGGGTGCTGCTGTTAAATGGGACCCAGACTCTGGATAACAGGACCGTGGAGAAAGGGGTGGTGGAGTACATCTTCTCTGACCTGGGACTGGTTCCTGGGAGGACCTACAGGGCTGGGGTCATGGTGGAAAGCACTGGGGAGCAAGGCACAGTGGAGTACTGCCACAGAGGAATAGcTCCTAAGCCCGTCTCAGAGCTTCATATCCGCCATGCTGACGAGACCTCCCTCAGCGCCCTGTGGAGTCACGCCCCCAACTCAGCCAGGGACGGCTACGCCGTAGAGCTCCGCCATGGCAATGCCACGGTTGCCACGAGAGACCTGACCCGTGACATGAGGGAGTGCACCTTCAACGTGCTCATGCCCGGACGCGTGTTCACCATCACCGTGACAACCAAGAGCGGGGAGCTCAACAGCTCTGTGTCTGTGCTAGGGAGGACAGtaCCTATGGAGGTGAGGCGTGTCCACCTGAGCAACCAGGGCCACGTGGACAGCTTACAGGCCAGCTGGGAACTCCCCCCTGGAGATCTGGACTTCTGCAGCCTGCAGCTCCTCCACAACAACCGGGCTGTGCAGAACCACACCGTCCCAGCCAACACCACCTCTCTGCAGCTCAGAGACCTCCGGCCGGGCGCCCCCTACAGGCTGGTGGTCAGTACTGTCAGTGGTGGGATGGTGTCGAAGCAGGCCGTGGCTGAGGGACGCACTGtaccAGCTGCGGTCGGAGAAGTTACGGTCAGTAACAACGGTCGTCCAGACTTCCTGGGGGTGTCGTGGCAGCCAGCGGTCGGAGATGTGGACAGTTACCTGGTCCTACTGAAGGACCGCGACAGGACCGTACACAACCTGGTGGTTTCTAAGGCAAGCCCAGAGTGTGTGTTTAACTCCCTCAAGTCAGGGAGGCTGTACACCGTCTCCATAGCAACCCGCAGCGGCAGCTTCCAGAACAACACGGTGGTGACGGCTCGTACACAACCCTCCAGTGTCCAGAACCCCAACGCCATCCACTCTGCCAGGGACGACTTCCTGAAAGTCTACTGGCGCCATGCGTCCGGAGACTTGGACCGTTACGAGGTGGTCATTAAGTACAACAACACGGTCGTCCAGAACCAGACGGTGGCGCGCTCGCAGAACGACTGCGTGTTCAGCTCCCTGGTGCCCGGGAGGCTTTATACAGTCACTGTCAGCACCTGGAGCGGAGAGTACCAGTCCAGTGTTTCTACTGACGGCAGAACGTTCCCCTCTGCGGTGCGGAGCCTGGCCCTGGGTGACAGTGGTACAGGTGACCTGGTGGTCACATGGTCTCCAGCGCTGGGGGACGTTGATCACTACGAGGTCCAGATCCTCTTCAACGACACGCGGGTTTACCCGCCCGTAACCCTGGGCAACGAGGCCCGTGACCACCGCCTGGCCTCGCTCACCCCGGGACGCCTGTACAAGATGGTGGTGTCCACCTTCAGTGGACCCAACCAGAGACCTCAGTTCATCGAGGGCAGGACAGtccccagcCAGGTGAGGAACCTCCATGCCCGGCCAGGGGACCAGGCTGCCAGCCTGAGGGTGTCCTGGACCCCTGGTGATGGAGACGTGGACATGTACACCGTGTCCCTATCCCAGGGAGCACACCTTCTGGAGACCAGACCTGTCCCCAAACACGTCACTGAGCTGGACTTTCAGGGTCTGGTACCAGGACAGCTGTACGGGGTCGAGGTTCAGTCCCTGAGTGGAATACTGGTCAATAATTCAACAACTACTGGACGAACAgtcccctCCACAGTGACAGCGCTCCAGGCAGACAGTGACCACACCACCCACAGTCTAACAGTGACCTGGGAGACTACAGTGGGAGTGTACGAGGGTTACAGGATCCAGCTCCTGGATGATGGACGTGACATAGTCTCTAATATTTCCATGCCCCAGGGCTCCACCAGGCACCTCTTCGACCAGCTCACCCCTGGAAAGTGGTACCGAGTTCAGGTCGTATCCGTCAGTGGAGGGATCTACGGCAAGGAGGCCGTGGCTGAGGGACAAACACgTCCAGCTGCAGTCAACGGTCTGACGGTGATGACTGCCAACACCAGCGGTCTGAGTTTCATCTGGCGCCCGTCCGAGGGCTACGTGGACGGCTACGACCTGTTCCTGTATAACGTTGACGAGACGTTGCGTGGCCGTCAGACCGTGGAGGCCGGAACCCAGACGTGCTCCTTCTCTGGTCTGGTCCCAGGGACGCTGTACAAGATGGAGGTGGTGAGCAGGAGCAGAGGCATGAGCAGTGACTCATCTATCCTGGCACGGACAGtcccagccccagtgcGCTCTCTCCACGTCCAGGGTGGTAAGCGTACTGACCGTCTCTCCATCAGCTGGCTGCCTGGGGCAGGGGAGTGGAGTGGGTACCAAGTGGTCCTGTACGGTGGCCTGGAGGGCTCAACCACTACCCTGGCCGCCCAGGAGCTGGGCATGGAGCAGAGAGAACACCTGTTCCAGGGACTGGTACCTGGCCGTGTGTACCGGGCTGAGGTGGTCACACACAGTGGAGAGCTGACTAATTCTGTGTCTGCGAAGGGAAGGACGGCCCCAGAGCCTCCCTCCATGGTATCCTTCAGGGACATCAGTGGTAACAGCTCTGTAGAACTGACCTGGGATGGTCCCGCCTCTGGTGACTACGACACCTTTGACCTCCAATGGGCTCCCAGAGATTCCCTGTCAATCACAGCGCCTCAGCCAACCAGCCGCATCCTGGATGGGATGTTCCCGGGACGACTGTACAACTTCACCATCCGCACTGTCAGTGGGGGAGGAGCCAAGGGCGGGCCTATCGCCAACAGCCAGCCAATCCAGAGGAGCCTCAGAACAAaCCCATCCAGACTGCGGAACATGCACTGTTTCCCCCAGAGTTCCTCATCCATCTCCTGTTCCTGGACCTTCCCTGACTCCCACTGGGACTCCTATACCGTGGAGGTGCGTCAGCAGGACAGCTGGGAGCTGGTGTACGCCCTGCGTCTGGCCCGGGATAGTACCTTACTCAGCCTGGAGAACCTACAGCCTTACAGGAGATACAACGTGGCTGTCAGAGTGGCCTCAGCTGGACTCAGCAGCCCCGCCGTGGAGGAGAACGTGGTCACCATGATCGACCGCCCGCCCCCTACCACAATACGGGTCAATGAGAGGGCGGTACGCATCACCCCCTCCACCATTTTGTTCAAGTTCAACTGCAGCTGGTTCAGTGACGTCAACGGAGCCGTCAGGTTCTTCACTGTCATCGTGGCTGAGTCCAATGACAATGAAGTCCTGCAGACAGAGCAGCTCCACCCTCTACCTTCCTTCCAGGACTACAGAACCAACAGTTCCGTGCGGGCCTACCAGACAGGCTACTTTCCCAGTGGCTGTGCCCAGGAACAGGGAATGGGAGCTGGGCATGTGTTTGAGGTCAACCTGGGGGCGGGGCTGGATCGCCTGGGAGGGCCTTGTGATTCAGAGGAGGATGATGATAACGATCACAGCAGTGATCTCTACCACTTCTGTGATGGGCCTCTCAAGCCTAAGACTGCCTACAGAATCAGTGTCCGTGCCTTCACTCAGCTGTTTGACGAAGACCACAGAGAGTTCCCCCAACCTCTCTACAGGGACACCTTCCTGTCTCCGCCCATCAGGACACATGCAGAGCCCCTCAGCGGAGTCATCGAGGGCATCAGCGCCGGAATGTTCCTGATCGGAATGTTGATCGCCGTCATCTCCCTCCTCGTCTACAGGCAGAGAGTCCGTAAAGTGGCAGTACAGGAGAGCCCAGTGGTACGGATGAGCATGTGGAAGCAGGGGCCCACATCAGGGATGTACGTTGGAGTCAGAAGCAACCGGCGCATCTCAAGCCCCGTCAAAGCAgcccattttgaatcccacctcACTAAGCTACAGGCAGACTCCAACTATCTTCTGTCAGAAGAgtttgaggatctGAAGGATGTGGGTCGTAACCAGCCTCTGGATGCAGCCCGTCTTCCAGAGAACAGGGGCAAGAACCGTTACAACAACATCCTGCCCTATGATTCCACCAGAGTGAAGCTCTCCTACCTGGAGGATGACCCCTGTTCTGACTTCATCAATGCCAGTTATATACCAGGGAACAACTTCCGCCGCGAGTACATCGCCACCCAAGGCCCTCTCCCCGGAACCAAGGATGACTTCTGGAGGATGGTGTGGGAGCACAACGTATACAACGTCGTCATGGTGACGCAGTGTGTCGAGAAGGGACGGGTGAAGTGTGACCACTACTGGCCGGCTGACCGGGAGCCTCTGTACTATGGAGACCTGGTGGTTCAAATGCTGTCTGAGTCTGTCCTGGCTGAATGGACAATCAGGGAGTTCAAGATCAGCTCTGAGGGTCGTCCCAGCTTCCCTCGGGTGGTGAGACACTTCCACTACACGGTGTGGCCAGACCACGGGGTCCCCGAGACCACCCAGTCCCTCATTGAGTTCGTACGGACCGTCAGAGACTACATCGACAGGGCCCCCAGCACTGGAGCCACCGTTGTTCACTGCAGtgctgGAGTGGGTCGTACAGGGACGTTCATGGTTCTGGACCGGGTCCTTCAACAGCTGGACAGCATAGGAACAGTGGACGTCTACGGCTGTGTGTTTGACCTCCGACTGCACCGCTCTCACATGGTGCAAACAGAGTACCAGTACTCCTTCCTCCACCAGTGTGTTCGAGATGTCCTGAGAGCCAGGAAGCTCCGTAGTGAGCAGGAGAACCCTCTCTACCCCATCTATGAGAACTTCAACCCAGACTACTACCGTGATTTTGTGTACACGGGACGCTAACTAACGACAGTCTGGGTTCCTCTCCACACAGCTGAGTGAGAAGGAAAACCAGGGAAGAATCTGTTCAATACCACCAGACAGCCATTCTGTCACAACTAAAGCACTatagagtgtgggggggggggggggtatagctATTTATTTTTGATACACTGTTGGTTCAACCTCTCAGGATGTCTATTTAAAATGGAGCAGATTGACGTCTGGAAACATTGGCGTTTCGTCCACTAATAGCTGAATCTTAATGAGATATGATTATATTGTTTTGCACCTAATTGTAAAGCTCTTCAAAGAAACATTATTCCCTAAACTCATGTTATTTCAATATTAATAATGTCTGATGAAAAAGACAAAAGGAACTGATATAAAATGTAGATATAATGATTCTTATTCAACATAACAGAAAAAAAGATGAATGAAAGCTATCAGGCGAAGCAATGAATGGGATTCTATGAGGCGTAGCTTCCCTGCATCACACAGCATTATTATGACAAGGCCTGAATGCCTGAAAACCTTCCCTGCATCACACAGCATTATTATGACAAGGCCTGAATGCCTGAAAACCTTCCCTGCATCACACAGCATTATTATGACAAGGCCTGAATGCCTGAAAACCTTCCCTGCATCACACAGCATTATTATGACAAGGCCTGAATGCCTGAAAACCTTCCCTATATCACACAGCATTATTATGACAAGGCCTGAATGCCTAAAAACCTTCCCTGAAGAAACCTTccctacatcccaaatggcaccctattctctatgggccctaatcaaaagttgtgcactatatagggaatagggtgccatttgggtacAAAGACTTTTCTGTATAATATGTTCTAAATCGTAGTTGCTGGTTTGTAGTTGAAAACAATAATGAACccggagcagacagacagacagctagctgTCTTGAGAGTAGCTCATCACAATGCTGTCTAGATCCTTGTATAAAGTAGCAGACCGTCTGTACAGTTGGTTGTGTTGTGAATAGTCCTCTTATCTTTAAACATGGCGTCAgttcatgttgtgtgtgtgtgtgtgtgtgtgtaccattgaGATTGTACAGTAGAGCCTGGAGGAGGGAACAGCATATAGTTTGTATGCCATCTCAGCTACCTATGTTTTCTAGGGCAAAGGGAAAACTCCACTGGAAAACAAACGCCATCTTGTTTTCGGTTGTTTCCGGAAAGAGGTGGTAACCTTTTCTCCGTGGTCTCTCGAACCAAGATGGAGGGAGTGTTCATGAGAGAGACTGTACGGGTTTTGTACATTACCTTCTTCAAAACATGATGTTGCATTTCTGATCATCCTTTTGCATGAAACTAGGCTGATGGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505843 lncRNA downstream 1203 66413368 ~ 66416251 (-) False LOC110519161
TU1505844 lncRNA downstream 1203 66413368 ~ 66416251 (-) False LOC110519161
TU1505845 lncRNA downstream 1203 66413368 ~ 66416251 (-) False LOC110519161
TU1505846 lncRNA downstream 1203 66413368 ~ 66416251 (-) True LOC110519161
TU1505865 lncRNA downstream 4315 66411949 ~ 66413139 (-) True G1319564
TU1505857 lncRNA upstream 755 66514279 ~ 66516219 (-) False G1319560
TU1505858 lncRNA upstream 755 66514279 ~ 66516219 (-) False G1319560
TU1505859 lncRNA upstream 755 66514279 ~ 66516219 (-) True G1319560
TU1505863 lncRNA upstream 4208 66517732 ~ 66518664 (-) False G1319563
TU1505864 lncRNA upstream 4315 66517839 ~ 66518664 (-) True G1319563
XR_005036194.1 mRNA downstream 1302 66413335 ~ 66416152 (-) False LOC110519161
XM_036944994.1 mRNA downstream 369555 66033061 ~ 66047899 (-) True LOC110499708
XM_036944993.1 mRNA downstream 369556 66033061 ~ 66047898 (-) False LOC110499708
XM_036944990.1 mRNA downstream 407988 65987932 ~ 66009466 (-) False LOC110500955
XM_036945009.1 mRNA upstream 6194 66519718 ~ 66553585 (-) False LOC110515929
XM_036945556.1 mRNA upstream 51394 66564918 ~ 66630601 (-) False LOC110519130
XM_036945010.1 mRNA upstream 141674 66655198 ~ 66713032 (-) False LOC110501008
XM_036945025.1 mRNA upstream 294885 66808409 ~ 66895359 (-) False LOC110490781
XM_036945023.1 mRNA upstream 294885 66808409 ~ 66895711 (-) False LOC110490781
TU1505596 other downstream 135346 66279045 ~ 66282108 (-) True G1319357
TU1505028 other downstream 944290 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 1266054 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 1266054 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1932136 64482827 ~ 64485318 (-) False LOC110499867
TU1506125 other upstream 294923 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 342655 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 350317 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 447427 66960951 ~ 66961304 (-) True G1319847
TU1506555 other upstream 567257 67080781 ~ 67084605 (-) True LOC110511902

Expression Profile