RNA id: TU1505851


Basic Information

Item Value
RNA id TU1505851
length 3226
lncRNA type sense_over
GC content 0.43
exon number 3
gene id LOC110515929
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66518773 ~ 66553585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAATGTGTTCTGTACTGGCCAGAGAGGCGTGGTATCTATGGCAAGGTGGAGGTGCTCATTAACAACGTGACAGAGTGTGACAACTACACCTGTCGGACCCTCAACCTGAAGCAAGGGGCCCAGAGTCGTGTGGTGAAGCACTACTGGTACACATCGTGGCCGGACCATAAGACCCCAGACAGCGCCCAGCCCCTGCTCCAGCTGATGAGAGACGTGGAGGAGGACAGGACGGGCTCCCTATCGCAGGGACCCGTCATCGTACACTGCAGCGCAGGGATTGGCCGAACGGGCTGCTTCATCGCCACGACGATAGGCTGTCGTCAGTTGGAGCTGGAGGGAGTGGTGGATGTGCTGGGGATTGTGTGTCAGCTCAGAGCGGACAGAGGAGGTCTGATCCAGACAGGGGAGCAGTACGAGTTTGTCCACCACGCCTTGAGCCTCTTCGAGACACGCCTCTCCGCCGACACCGGCCAATGAACAGAGGCCAGGAAGTTTTCGTTAAAACATGCCAGGTTTTTCCAGGAAGTGGAATTTAATTTCTCCCTGGCGGGAAGGACCTATCTTACCCGGTGACTGTGAGGTCATGTGACTAATGAGGAAGTGGATGTTTGCGTGACGATTGGATGGTAGATGTCCTTGTGGGCTTTGTCTTTGTGGACATGTATGGACAGCCTGGACTGCTATTGGCTGATTGATTGAGTCtccttacagagagagagatggaggtatggACCGGTGATTTTGTCTCTGAATGTAATGTatcctttcttctcttcctctctttcctcctcttcttctactacttcctGTCATTCGTGAGCAGCTCTGCTTCTGAAAACGTTGTTGTGAGCAACCTGCCTCTGTCCAATCAAACTCTCTGATACTGCAGCTCTGTCCAATCAGATTGCCTGATATTGATTCCGTAGTATACCTACACTCTGACCTCTTACTACTATGCGCTATAGTGGATGGGTAGGTAGTCTGTGGTCCTTGAATCGTCCATGGTGTTTCTATTAAAAAGGAAAAAGTACGTTGTTGAAATGAATAGCACTTGTCTTTGTGACTTTACTAGGATATTtttgaattctgattattttatttatttttaactatGTGTTGTTACACAAAGGTTATTATTCTGAAGACTGTTATATTCCATTGGAGGTTGGCTTTTCTCTCAGTAACACACTAGAAGCTGCCCCTCTGCCATATACTATACCTCTAATAGCATGTTGATCATCCATTGAAAGATCAGTGTATGAAAGGTGAGGGAACGATTGGGCCTGTCTGCACGGCCACTACACATCAAAAGGTATTTTCACCATGGGGATGGCCATTATACACACTGAATTGGAAGCAAATAACAAACATAAAAAGCCAGCCGACACGCAGGCCCTTCAGGAATTGAGTTTGGCAGCCCCCTGCTATAGGCCCCTCCTGTAGATCTACCGTATTCACAGAGAACTGTCATGGCCGCCGTGTGATCCAATGTTCCATACCAAAGCTCTCTGTTATCAGGTGCCGTGTGATCTACCCTGGCTCTGAAACGACGTTTCATCAGTAAATCAATATTTAATAACAAAACCTTTTTCTTTTCAGAAAATCAGTTATTTTCCCATTTCTTATCTTTCACATCCATCCTCAGGTATATTGTGTTGACCATTAAAGGCCccgtgcagtcaaaaacatgattttgtccccccccctgtgttttatatatatatacacacatactatGATGTTGGAATAAGGCAGTTAATTGAAATTGAGATAAAAAACGGCTGCGTTGGGCCTTTAAGCATCACAGATATATGACAACTTTCtttaccaaaatgtaaatgtttgcGTTTAAATGACATGTCATGTTTAATTGTTGATCATATAGATTAaattatagtaataataataatgatttttAGTTTTATACAATATTAAGATAATGTTTTGATGTGTAACAGTAAACTCATGATCGTTTGGTACTTTTAGACATGTTTTCTCTGTATGACTGAATGGTGTAGATTCCCACACACTTTATCTCTAGAACCAACCAATTATTACAAGGATAACGTCAATCAGACActtataaaaaaaaattgtctggATTATCTGACCCTGATTTCAAactctgatatactgtagcttctAAATGCCGAATACATACAGTTGtagtaagaagtttacatacaccttagccaaatacatttaaactcagtttttcaccattcctgacatttaatcctagtaaatattccctgttttaggtcagttaggatcaccactttattttaagaatgtgaaatgtcagaataatagtagagagaattatttatttcagcttttatttctttcatcacattcccagtgggtcagaagtttacagacactcaattagtatttggtagcattgccttaaaattgtttaccttgggtcaaaagttttgggtagccttccacaagctgcccacaataagttgggtgaattttggcccattcctccttacagagctggtataactgagtcaggttacacctaggtaggcctccttgctcgcacatgctttttcagaatctgcccacaaattgtctatagggttgaggtcagggctttgtgatggccactccaataccttgactttgttgtccttaagccattttgccacaactttggaagtatgcttggggtcattgtccatttggaagacccatttgcaaccaagctttaacttcctggactgatgtcttgagatgttgcttcaatatatccacataatattcctacttcatgatgccatctattttgtaaagtgcaccagtccctcctgcagcaaagcacccccacaacatgatgctgccacccccgtgcttcacggttgggatggtgttcttcggtttgcaagcctccccctttttcctccaaacataacgatggtcgttatggccaaacagttctatttttgtttcatcacaccagaggacatttctccaaaaagtacaatctttgtcccaatgtgcagttgcaaactgtaatctggctttttttatggcgattttggagcagtgacttcttccttgctgagcagcctttcatgttatgttgatataggactcgttttactgtggatatagatacttttgtatctgcttcttcacaaggtcctttgctgttgttctgggattgattttcacttttcgcaccaaagtatattcatctctaggagacagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505863 lncRNA downstream 109 66517732 ~ 66518664 (-) False G1319563
TU1505864 lncRNA downstream 109 66517839 ~ 66518664 (-) True G1319563
TU1505857 lncRNA downstream 2554 66514279 ~ 66516219 (-) False G1319560
TU1505858 lncRNA downstream 2554 66514279 ~ 66516219 (-) False G1319560
TU1505859 lncRNA downstream 2554 66514279 ~ 66516219 (-) True G1319560
TU1505907 lncRNA upstream 18648 66544928 ~ 66547948 (-) True G1319602
TU1505854 lncRNA upstream 25557 66551837 ~ 66562591 (-) False G1319559
TU1505855 lncRNA upstream 29046 66555326 ~ 66562591 (-) False G1319559
TU1505853 lncRNA upstream 35020 66561300 ~ 66562591 (-) True G1319559
TU1505929 lncRNA upstream 90816 66617096 ~ 66617707 (-) True G1319620
XM_036945007.1 mRNA downstream 5249 66417454 ~ 66513524 (-) False LOC118938831
XM_036945008.1 mRNA downstream 5249 66417454 ~ 66513524 (-) True LOC118938831
XR_005036194.1 mRNA downstream 102621 66413335 ~ 66416152 (-) False LOC110519161
XM_036944994.1 mRNA downstream 470874 66033061 ~ 66047899 (-) True LOC110499708
XM_036944993.1 mRNA downstream 470875 66033061 ~ 66047898 (-) False LOC110499708
XM_036945556.1 mRNA upstream 38638 66564918 ~ 66630601 (-) False LOC110519130
XM_036945010.1 mRNA upstream 128918 66655198 ~ 66713032 (-) False LOC110501008
XM_036945025.1 mRNA upstream 282129 66808409 ~ 66895359 (-) False LOC110490781
XM_036945023.1 mRNA upstream 282129 66808409 ~ 66895711 (-) False LOC110490781
XM_036945024.1 mRNA upstream 282129 66808409 ~ 66895711 (-) False LOC110490781
TU1505596 other downstream 236665 66279045 ~ 66282108 (-) True G1319357
TU1505028 other downstream 1045609 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 1367373 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 1367373 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 2033455 64482827 ~ 64485318 (-) False LOC110499867
TU1506125 other upstream 282167 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 329899 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 337561 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 434671 66960951 ~ 66961304 (-) True G1319847
TU1506555 other upstream 554501 67080781 ~ 67084605 (-) True LOC110511902

Expression Profile