RNA id: XM_036945010.1


Basic Information

Item Value
RNA id XM_036945010.1
length 5990
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110501008
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66655198 ~ 66713032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GaaaaacagaagagagagaatagaggaagaCGGAACCATGTGCACAGGATTCTCTTCTATTTCACAGTACTTCAACGTTGCTCAGttcactccctcccccctctctctcatacacactccccctctctctcgctcagctgctctccctcccctcctgtggatggtgtagctctctctctctccctctctgtctggcgGAGCCGTGGACAGGATTGGAGGCTAGTAGTGAGTGactgcggagagagagagagactgaagagaagagaggagagcagagcagaagaGAGATCTATATTAGCAGTATCTCTGCTGGATACCTCTTCAATATTTCAATCAGAATTCTTCCTCAACCAGCTCGAGCCTCACACTTCCCACCGGACCCCCATCACCCTACCCTTACCAGGGGGACATATGAACAGCACAGAGGGTTTACCACCCCGGACCTCCACACAGGGAGCCATGTGATACCCCCTTGCGCTGCTGAAATTCCCCCAAATCGGTGCTCTGAATCGGGATTGAAACCAAGGATTGTATCCACCCTGCTTGAAACCCCCTCCTGGGTTTGTGGATCTTCTCTAGCTgcaagaggaggaagggaagggagggactGCTAGGTCTCTGCATACCCGGCTGGGAGACACTCTTCTCTGGGCAAGTGTGGGGTGTGTGCCCCCCTTGGGCTGGAGGCCAGCGCTCCAGCACCATGGATTACCTACCTGGGATTgtactgttgctgctgttctGCGGGGCGGTGGTGCCGGGGCAGGGGGAGCCCAAGCACAGCGTCCCCAGGTTAAAGCTCTCCTACAGGGagatggTAGAATCCAGTAACCTCATCACTTTCACCGGCCTCACCAACAGCTCCGGCTACGACACCTTCCTATTggacgaggagagaggaagacTGTTGGTGGGTGCCGAGGACCACGTCTTCTCCTTCGACTTGGTCAATCTCAACAGAGAGCACAAACAGaTCGCATGGCCAGCCACACCCTCAAAGCGTGACGAGTGCAAGTGGGCGGGGAAAGACCTCGGGAAAGAGTGTTCCAACTTCATCCGAGTGCTCCAACCCTACAACTCCACCCACCTGTATATCTGTGGTACAGGGGCCTTCCATCCCATCTGTGCCTACCTGGAGATGGGCAAACGGGCAGAGGACAACATCTTTCGACTGGAGTCGTCCCACTTCGAGAACGGCCGGGGGAAAAGCCCCTACGACCCCAAGATGCTCTCTGCGTCCATCATGTTAGATGGGGAGCTGTACTCTGGCACATCGGCAGACTTCATGGGAAGGGACTTTGCCATCTTCCGCACCCTCGGGGAGCATCATCCTATCAGGACTGAGCAACATGACTCTAGATGGCTCAATGaccccAGGTTTGTAGGTGTAAACCTGATCCCAGAGAGTGACAACCCTGAGGATGATAAGATCTTCCTCTTCTTCAAAGAGAACGCTATGGACGGAGAACACACTGGCAAGGCCACTATTGCCCGCATAGGACAACTGTGTAagAATGACCTGGGAGGTCACAGGAGTCTGGTCAATAAGTGGACCACCTTCCTCAAGGCCAGACTGACCTGCTCAGTGCCAGGCCTCAACGGCATCGACACACACTTCGACGAGCTGCAGGATGTCTTTCTGATGAGCTCCAAAGATCCTAAGAACCCAGTGATCTATGCTGTCTTCACCACTTCTAGTAACATATTCAAAGGCTCAGCAGTGTGTATGTACAACATGGCAGACATCCGGAGGGTCTTCCTGGGTCCCTATGCCCACCGAGATGGGCCCACCTACCAGTGGGTACCCTTCCAGGGGAGGGTGCCCTACCCCCGCCCTGGCACGTGCCCCAGTAAAACGTTTGGGGGCTTTGACTCCACCAAGGACCTCCCTGATGATGTGATCACCTTTGCGCGGGGCCACCCGGCCATGTTTAACCCCGTGCACCCCATCGGGGGTCGTCCCATCGTGGTGAGGACTGATGTGGACTACCAGTTCTCCCAGCTAGTGGTGGACAAGGTGGAGGCCGAGGACGGACAGTACGACGTCATGTTCATTGGAACAGACCTTGGCACGGTCCTGAAGGTGGTTACCATCCCAAGAGAGAGCTGGCATGACCTGGAAGAGGTGGTCCTGGAGGAGATGACCGTGTTCAGGGAGCCCACCCCCATCACAGCAATGGAGCTTTCCACCAAACAGCAACAGCTGTACCTGGGCTCGACGCTAGGCGTTTCCCAGATGCCTTTGCACCGCTGTGAGGTGTACGGGAAGGCTTGCGCTGAGTGCTGTCTGGCCCGTGACCCCTACTGTGCCTGGGATGGAACAGAGTGCTCCCGTTACTTCCCTACCGCCAAgcgGAGAACGAGACGCCAGGACATCAGGAATGGAGATCCCCTCTCCCAGTGCTCCGACCTGCAGCATCATGATGACGTGGACGGGCTGGGTCATGTGGAGGACAGGAGTGTGTACGGAGTGGAGAACAGCAGCATGTTCCTGGAGTGTAGTCCCAAGTCCCAGAGAGCCCTCATCTACTGGCAGCTCCAAAGACCCAACGAGGACCGCAAACATGAGatcaAGTCCGAGGACAGGATGATCCGCACGGAGCAGGGCCTGCTCATCCGCATCCTCACCCAGGCCGACTCAGGCGTCTACACCTGCCACGCTGTGGAGCACGGCTTCATCCAGCCCCTCCTCCGCCTCTCCCTCCAGGTCATCCCCACACAGAGGCTGGGTGAGCTGCTGCCTGGTGGGCCTCAGGGTGGAGCTGGAGGGTCTGGTGGCGCAGGTAGTGGGTCTGGTGGTGCAGGTGGGCCTGCTGGTGCAGGGCACTCAACAAAACACAAGCTGTGGTACAGGgatttcctctccctcctcgaCCACCCTGACCTGAACAGCGTGGAGGAGTTCTGCGAGCGTGTGTGGCGGAAGGAGCGCAAGCAGCGGCGTCTGAAAacccccaccatcaccaccaatgACCAAAGTCTGGCTAGGCCTGACGGCGGAGCTCCAAGCTCAGGCCTAAAGCCTAAAAGTAGTCCTCTTGGCGCAGGTGCACCCAATGCCCAGAAGCAGCAGAGCGGGCATCCTACggtgcagcagcagcagaacaAAGAAGGGAGCCCCCGGAGCACGAACCCCCAGAAGGTGCAACACCATGCGGGTACGCTAACCCAGGCACAGGCCCCTAAAAACAACAACCAGAATGCCCAGAACTCTCAGGCCACACCCAACACCCAGAGCCCCCAGAAGGGCCAAGGCGCCCTGGGGGGAACCCAGGTGCCTGGTGGTGGGGCCAGAGGTGGACCCCAGCACACGGCCAAGTGGAGGCGAATGCAGGAGAATAAGAAGGGGCGAAACAGGAGAACCCATGAGCAACAGAGACCCCCGCGGAgtgtctgagacacacacacagcaacacacacacttacacacatatTGTACATTAAAACATAGACTTGCTATCCCATAAAGATATAATGTAGGATCCCACATAATGCAATACTCATGGTCATATGCTCATTCACACATAATATGTAGACAGAAATATACCATCCAAATGGAATGCTCTAAAACATAcacccaaagcacacacacacacacacagtagccatGGCTACTAGGTCATAGGGTTACAGacctgggtacacacacacacacgcacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacactgcaaatacCCTGTGAAGACTTGGAGAAGACTGGCGACTAACAGGACATTGAAGACTGAGGCTAAACTGGAATCGTATGCGTACTGTACATGCTAACCATGTGGATATAGTGGCCCAGGGGGTACAATTTGAGGAACTGTGTAGTCCAGGTCCGTGTTGCAAGTGGGACAGAGTTATCTGGCGGACACATGGCCCTTCTGTACAGACGCTACTTCCGTATGGGACTGGGATGGGGTTAAAAAACATTCATTTTCAGTGAGGATGATACATATTCAGACCTCTGGACAAGTTTGGACAATGACCTCTACAGGACATTTCAGAAGACATTTCAGAAGGGGTTAAGACATTTAAGTTCAGTAGGGACGTCCATTACTGCAGCTACTGGCCTTGTTGACATGCGCAGAAGGAAGAGGAtgtccactatatagagaatggaAGAACTATGAGGATAAGAATCATTTGTCCAGTCGATTGCAAACTAGAACCGAAATACATCAAAAGAAGCACAGTCATTTTCAGAGAGTGAACTGCATTTCCCACAATACAGTTTGTCGGCTCAACTTTATTCAACTGATTCGATTCACAATGACTCTCATGAATGAGCACTTTGGGCTTGTACATAGAGCTTGACTGTCTTATAGGTCAAACAGATTAAATGGGGCACAGTTAGCTGATTAACAATCCACAACGGTGCCCTGCATATTGTTTATAGTTCAATAACAGAATTATTCAATATAAAACGACAAAATCCACATTAGCCTGTGATCTGTGCAGCAAAATCAAGCTTCTCTTCCTCCCAAGGCTTGAAAAGCATTGTGCATGTCGTAGTCAGTCAATATTCATGATTTGAATAAGCTATTTCTCGCCAGTTACTCGCTATGTAAGGTTTTTTTATGTTAAAAGGAGTCCTATGAAAGAAAAATctattttctgtttttatttgatatttacttctctctctccctacaaaCCACTGCATCCCTGTAGGGGTAAACAATTATGTAGTAGAATTTTTTGACCTGCCCCTTTAAGTTATTTTTCTTTCTTTGCTTTCTCCTGGAGTTGCGTGTGAATTTATAATTCCAGTCATATGTTCGTGCTCAGTCTGGAAAACAGACTGCCTATTGATTCTGTACATATACATACAACAACAAAATGACTCTTTatgtatgtaaatatatacaaCCAGAACACCACTGATTATTTATTTCTCATTGTTTTGTGAAAGGGTTGCATTTATTTTTGATATTCTGGTATTTTGGCTCATCAATAATCAAGAAAAAAAACTGTGGCACGTTGAGAAACACAAACGGACCAATGAGGACGGACTTCCTCTGTCAAGGACTCCGTTTTTTTCCGGGGGGGGGCGTGTTTCGGAAGTGAACCACGGGATGAAGGTGGGAGCAGGGGGTTGTTGTGTGTTTTACAGTATCCAGACTGAGAGCCTTCAGGATGATAAGCACAAGTTTCTCAAACCCTCTTCTACGTTTCTGTCTCTTCTGGTCTTTTCCTAAATGGCTCATTTTTCTACCCAGGAGGTGTTTTCGTTGGAGTTTGGAATCCCATCCACCTATCTCATTCGTTCATCCCAAATACTCATTTTATGTAAGATAATACTACCCAAAACCTGATAAACATTAGCTGTGAATTCCTATGTAAGAATTAGTAAGGAAAAGGTTCCAATCTAAACCTAGTCTGAGGACGCTGAGTTAAAGCTGCATGTGAATGCTACTTAAGTGCATCTTTTCTATTGTCTCTAGATGTTTCCTGTGAGAGGTAAAGGTCCCGTGGGCAACATGTGCAAGAGAGATGTGAATATTCTTTCTTTTTGCCAAAACAAAGATGGCAACATgtaccaggggtgtattcattaggaaccaaacagaagcaaacagGCCTAAACGGGGAGGGActaacctgaacttgtccaataacaaaCACACATTTTTGTCGCAAATCGTTTTCTGTAGCTAAACGTTTTGCTATGGTGTctgctaatgaatacaccccagtgaTGTTACTCCAACCCCAAAACTTGTATTAAGACCTTCAACTTTTCATACAACTATGTGTTTCCCCCTCAGTAAACAACAAGACTGATGTGTCATTGCAATAATGGACAGCAGATAGCAAGGTTTCCTGGTGGTTTGTGGTATGTTTCTGGTCTCTCACGGTGTGTAGGGTGGACGAGGAGAGAACAGATACCTCTGCTGTAACATGGTTCTTCCTGGCATGCGTTCAGTTGTCTAATTAAACATTTCCTGTAAAACcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505914 lncRNA downstream 16573 66629402 ~ 66638625 (-) True LOC110519130
TU1505929 lncRNA downstream 37491 66617096 ~ 66617707 (-) True G1319620
TU1505854 lncRNA downstream 92607 66551837 ~ 66562591 (-) False G1319559
TU1505855 lncRNA downstream 92607 66555326 ~ 66562591 (-) False G1319559
TU1505853 lncRNA downstream 92607 66561300 ~ 66562591 (-) True G1319559
TU1506141 lncRNA upstream 75813 66788845 ~ 66792001 (-) True G1319793
TU1506126 lncRNA upstream 95415 66808447 ~ 66813124 (-) False LOC110490781
TU1506154 lncRNA upstream 107400 66820432 ~ 66829319 (-) True G1319803
TU1506170 lncRNA upstream 156262 66869294 ~ 66884898 (-) False G1319818
TU1506181 lncRNA upstream 156948 66869980 ~ 66878663 (-) False G1319818
XM_036945556.1 mRNA downstream 24597 66564918 ~ 66630601 (-) False LOC110519130
XM_036945009.1 mRNA downstream 101613 66519718 ~ 66553585 (-) False LOC110515929
XM_036945007.1 mRNA downstream 141674 66417454 ~ 66513524 (-) False LOC118938831
XM_036945008.1 mRNA downstream 141674 66417454 ~ 66513524 (-) True LOC118938831
XR_005036194.1 mRNA downstream 239046 66413335 ~ 66416152 (-) False LOC110519161
XM_036945025.1 mRNA upstream 95377 66808409 ~ 66895359 (-) False LOC110490781
XM_036945023.1 mRNA upstream 95377 66808409 ~ 66895711 (-) False LOC110490781
XM_036945024.1 mRNA upstream 95377 66808409 ~ 66895711 (-) False LOC110490781
XM_036945022.1 mRNA upstream 95377 66808409 ~ 66920061 (-) False LOC110490781
XM_036945011.1 mRNA upstream 211010 66924042 ~ 66940668 (-) False LOC110490597
TU1505596 other downstream 373090 66279045 ~ 66282108 (-) True G1319357
TU1505028 other downstream 1182034 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 1503798 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 1503798 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 2169880 64482827 ~ 64485318 (-) False LOC110499867
TU1506125 other upstream 95415 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 143147 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 150809 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 247919 66960951 ~ 66961304 (-) True G1319847
TU1506555 other upstream 367749 67080781 ~ 67084605 (-) True LOC110511902

Expression Profile