RNA id: XM_036945022.1


Basic Information

Item Value
RNA id XM_036945022.1
length 2968
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110490781
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66808409 ~ 66920061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAAGAGCTGAGAACCCAAGTCAACTTGTCATTATAGGAAACAGCAAAGTATGTTACTATTACATGCTTTTATGTCTAGCAGTACCTTTTGATCATCAGCCTCAAACCTACACCTCACAATAATATCACCCTCCCCTTGTCAAAACCGTGATGAATTAACATGCAAAAAATGTGCTGTGCTTCCACAATCTTCCAAACAAAACCAAAGGATCATTGCCAAAGACAAGAATCTCCACAACTACAGagctgtGGAGGGGAGATGACGGCCATGTACAAAGACGACCAGGGTGACTGGATGACCGTCTGCCTCAAGTACCTCCTCTTCGTCTTTAATGTCCTCTTCTGGGTTGGTGGAGCGGCGGTGATGGGCGTGGGCATCTGGACCCTGATAGACAAGAGTGATTACCTGAGCCTGCTGGCCTCCAGCACCTTCGCCGTGTCCGCCTACATCCTCATCCTGGCCGGGGCCCTGGTCATGGTCACGGGCTTCCTGGGCTGCTGCGCCGTCATCAGGGAGCAGAGGAGCTGCCTGTCCACGtatTTCTGCTGTCTGTTATTGATCTTTCTCATAGAGCTGGTGGCAGGAGTCCTGGCCTACGTGTATTACCAGAGGcTCAGTGAGGAGCTGAAGCAGCACCTGAATGAGACCATGACAGAGAACTACGCCCAGCCAGGGAAAGAGGCCATCACCCTGGCTGTGGACAGACTACAGCAGGATTTCAAGTGCTGTGGCAGCAACAACTCATTAGATTGGCTGCAGAGTGTGTACATGACCTCGGCTGTGTCGGAGGGCAGGGTGGTCCCGGACAGCTGCTGTAAGACCATCACCACCCTCTGTGGCCGCAGAGACCACCCCTCCAACATCTACAAGACTGAGGGTGGCTGCATCACCAAGCTGGAGCAGTTCCTGGCTGACCACCTGCTGATCATCGGAGCTGTGGGGATAGGAGTGGCCTGTCTACAGCTGGCCGGGGCCATGTTGACGGCCTGCTTTATCTATCTGCTGtataaagaagaggaggaggacttcTCTGCCGTGTGATTGGCTAAGCCTCTGTCTGGTCACACTCAGTGGGGACGGGACAAGatcTGTGGGATGGTGTTCACATGCTGCTTACACAGAAGGATTAAGTTGGATCCTTACTGAACCCTACCGTCAAGCCCCCCCAACACCATCCTGCCTCATGGGCCAGGGAGCAACGATGCCTGCTGAACACTCAACCTTGACCTCTAACCCCTCCTAACCTCTGAACCTTACGATCCAACCCTGCCTGGACCTTCCTGGATCCTTCTGCACCCCTCCCTTGGCTTGGATGCAtgcatagccccccccccctctcaaagACAAGGCCAATGAAGAAGAGATGATTTGGTATTATGGTATTGTTATTTTCTGTAGGTAACCTACTGCTGTTTATGTAAGGTAGCTCTTACTGTATGTTGTCAATACAGTCAAATCCTTACTGTAGATTTCACAACATTCCACACAACTGGAAGGCAACCCGAAGTGGTTGTGACTGAGAATCAAGTGTACTGTACACACTCTCATGGCGTTGCTGCTTACGAAGGGTTATTCAGTTAGTGCTATATCCAGTGTGTCACGGATGTGGCCCCCAACGTGCCTCTGTCATTGTTTTATCACGTATTCTTTGATAGCAATGTTACACCAATGTAATGGTTCACCACAAAGGGAATCCCATGGTCATCGATGTTTGATCTACGTCACAAAGAAAACAATCATGAGTTGATTGATATCCACAGAATAATCAAGCAGAAATGGGGAAAACCTATACTTGATATGAATGAAAATAGCACTAAACGCTGCTAAGAGTAACGTTGCAGCATTTCTGAATGTGTTGCCTCCGTAGTTTGACTAACACATCTGGTTCTGTGTTGTATGCTATGCTAAAGGTGTTGATATCGGCAAAATCGCCTCTCTTGCAGTACCATATAAACCTACCACTCATCTTTCAATACCAGGACCAGTTGACTTGTTTTACGACCACTTTTATTATGCTGGAGAAACATGTTGTGATTTACtactgatacagggtcagatctTTCTCTGTCACGCTACTGGTTAAGATTAGGATTCAGGGGTTATGGGTGACTTCTAGTTGAACAGGAGAGGTTTGAACTGTCATGAGTCAGTCCTCTCCTCTGGTGTGGGTTAGTATCCCCATCCAGTGGTAGATATTGGTATATACTCCTGTGCAGTGCTCCTGTAGTATTCTGTGTAAGGTTGCAAAATTTGgagaactttcaataaattccctggttttccagaaatcctgtttgGGGGATTCCGGATTGTCTGCTTATGTCTTACACGTTTCCACAAGAGGACACTTTCAAAGAGAGCATTCATTGGCTTGACTATTGTCAAGGACACATTCAAATAGTATTGGTTGTCCATTACCAAGATAGGACATGGGTCTTTGTTTTTTAGGAGTGCTGGTAATTCAGCTGACCAGTTCCAGTTGATACAATGACAACAATCCTTTGTCAAAGTTCTATGGATGTTTTGCTGTTTTCCAAGACATGTAGACCCTTATACAGATGGTATTTGTTCTATTCCTCCTAGTGACCAACAGAAAGCTGTTCTTGTTGTTCATGTATTTTTCTAATCGAAATGGGTCAAAATATGATATAACATTATAGTATGTTTAATATAAAATATCTAATAAAACATATATGATCTGGGCTCTTTCTATACTGTAGACTGTAGTAATCAAAGTATGCCTTTGTCTGTTTAACAACAATGTCATACTAGCTTTTGAATTGATGTTGATGGTAGTCTTTAACCAGATAGACTTTATTTGTGTTTCCTACATCATTCAGTGGTTTGGTATTATTATTCCCTGCCGGTCTCTTTGCATCAAGGTCTTGAATGTTTTGTTACAGTATATGACTATTGCTACTTTAAGACATCATAAAATGTTGATATTTAAACTCTGAGATATGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1506141 lncRNA downstream 16408 66788845 ~ 66792001 (-) True G1319793
TU1505944 lncRNA downstream 145491 66655198 ~ 66662918 (-) True LOC110501008
TU1505914 lncRNA downstream 169784 66629402 ~ 66638625 (-) True LOC110519130
TU1505929 lncRNA downstream 190702 66617096 ~ 66617707 (-) True G1319620
TU1505853 lncRNA downstream 245818 66561300 ~ 66562591 (-) True G1319559
TU1506229 lncRNA upstream 24209 66944270 ~ 66944941 (-) True G1319840
TU1506230 lncRNA upstream 25185 66945246 ~ 66945497 (-) True G1319841
TU1506232 lncRNA upstream 33577 66953638 ~ 66953932 (-) True G1319843
TU1506234 lncRNA upstream 38737 66958798 ~ 66959012 (-) True G1319845
TU1506235 lncRNA upstream 39869 66959930 ~ 66960160 (-) True G1319846
XM_036945010.1 mRNA downstream 95377 66655198 ~ 66713032 (-) False LOC110501008
XM_036945556.1 mRNA downstream 177808 66564918 ~ 66630601 (-) False LOC110519130
XM_036945009.1 mRNA downstream 254824 66519718 ~ 66553585 (-) False LOC110515929
XM_036945007.1 mRNA downstream 294885 66417454 ~ 66513524 (-) False LOC118938831
XM_036945011.1 mRNA upstream 3981 66924042 ~ 66940668 (-) False LOC110490597
XM_036945012.1 mRNA upstream 3981 66924042 ~ 66940668 (-) False LOC110490597
XR_005036195.1 mRNA upstream 3981 66924042 ~ 66940668 (-) False LOC110490597
XR_005036196.1 mRNA upstream 3982 66924043 ~ 66940668 (-) False LOC110490597
XR_005036197.1 mRNA upstream 4683 66924744 ~ 66940668 (-) True LOC110490597
TU1505596 other downstream 526301 66279045 ~ 66282108 (-) True G1319357
TU1505028 other downstream 1335245 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 1657009 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 1657009 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 2323091 64482827 ~ 64485318 (-) False LOC110499867
TU1506236 other upstream 40890 66960951 ~ 66961304 (-) True G1319847
TU1506555 other upstream 160720 67080781 ~ 67084605 (-) True LOC110511902
TU1506612 other upstream 273055 67193116 ~ 67193493 (-) True G1320139
TU1507110 other upstream 872964 67793025 ~ 67797835 (-) True LOC118938833
TU1508038 other upstream 1152340 68072401 ~ 68176382 (-) True LOC110513021

Expression Profile